Hb_005839_050

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig5839: 42092-48960
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005839_050 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_003061_010 0.1950203672 - - hypothetical protein SORBIDRAFT_01g039870 [Sorghum bicolor]
3 Hb_005916_030 0.2074782912 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
4 Hb_002151_080 0.214970352 - - hypothetical protein MIMGU_mgv1a000572mg [Erythranthe guttata]
5 Hb_006018_070 0.2176814599 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
6 Hb_049944_010 0.2202455957 - - transducin family protein [Populus trichocarpa]
7 Hb_003964_090 0.2291107753 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
8 Hb_027472_030 0.2325432834 - - RNA helicase 36, partial [Manihot esculenta]
9 Hb_023732_090 0.2351561716 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_000230_040 0.2375141522 - - PREDICTED: protein MON2 homolog isoform X2 [Vitis vinifera]
11 Hb_033363_070 0.2401124798 - - PREDICTED: LOW QUALITY PROTEIN: methionine aminopeptidase 1B, chloroplastic, partial [Populus euphratica]
12 Hb_012052_010 0.24340722 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
13 Hb_137461_010 0.2483931456 - - hypothetical protein POPTR_0011s03680g [Populus trichocarpa]
14 Hb_000062_420 0.2488831717 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000891_040 0.2529282922 - - hypothetical protein JCGZ_11252 [Jatropha curcas]
16 Hb_002007_180 0.2540199351 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
17 Hb_003041_060 0.2541008104 - - -
18 Hb_007229_070 0.2552231039 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
19 Hb_096490_020 0.2557079595 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
20 Hb_126112_010 0.2557621428 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]

Gene co-expression network

sample Hb_005839_050 Hb_005839_050 Hb_003061_010 Hb_003061_010 Hb_005839_050--Hb_003061_010 Hb_005916_030 Hb_005916_030 Hb_005839_050--Hb_005916_030 Hb_002151_080 Hb_002151_080 Hb_005839_050--Hb_002151_080 Hb_006018_070 Hb_006018_070 Hb_005839_050--Hb_006018_070 Hb_049944_010 Hb_049944_010 Hb_005839_050--Hb_049944_010 Hb_003964_090 Hb_003964_090 Hb_005839_050--Hb_003964_090 Hb_000230_040 Hb_000230_040 Hb_003061_010--Hb_000230_040 Hb_126112_010 Hb_126112_010 Hb_003061_010--Hb_126112_010 Hb_000891_040 Hb_000891_040 Hb_003061_010--Hb_000891_040 Hb_156526_010 Hb_156526_010 Hb_003061_010--Hb_156526_010 Hb_003061_010--Hb_002151_080 Hb_000995_050 Hb_000995_050 Hb_005916_030--Hb_000995_050 Hb_000575_080 Hb_000575_080 Hb_005916_030--Hb_000575_080 Hb_005260_020 Hb_005260_020 Hb_005916_030--Hb_005260_020 Hb_022461_010 Hb_022461_010 Hb_005916_030--Hb_022461_010 Hb_001054_130 Hb_001054_130 Hb_005916_030--Hb_001054_130 Hb_006502_080 Hb_006502_080 Hb_005916_030--Hb_006502_080 Hb_002151_080--Hb_000230_040 Hb_000032_060 Hb_000032_060 Hb_002151_080--Hb_000032_060 Hb_000088_020 Hb_000088_020 Hb_002151_080--Hb_000088_020 Hb_000523_090 Hb_000523_090 Hb_002151_080--Hb_000523_090 Hb_000181_180 Hb_000181_180 Hb_002151_080--Hb_000181_180 Hb_013691_020 Hb_013691_020 Hb_006018_070--Hb_013691_020 Hb_005511_100 Hb_005511_100 Hb_006018_070--Hb_005511_100 Hb_003073_050 Hb_003073_050 Hb_006018_070--Hb_003073_050 Hb_006018_070--Hb_002151_080 Hb_006018_070--Hb_003061_010 Hb_006018_070--Hb_000032_060 Hb_137461_010 Hb_137461_010 Hb_049944_010--Hb_137461_010 Hb_049944_010--Hb_003964_090 Hb_004137_080 Hb_004137_080 Hb_049944_010--Hb_004137_080 Hb_027472_030 Hb_027472_030 Hb_049944_010--Hb_027472_030 Hb_001912_070 Hb_001912_070 Hb_049944_010--Hb_001912_070 Hb_012052_010 Hb_012052_010 Hb_003964_090--Hb_012052_010 Hb_001427_060 Hb_001427_060 Hb_003964_090--Hb_001427_060 Hb_013818_050 Hb_013818_050 Hb_003964_090--Hb_013818_050 Hb_000656_100 Hb_000656_100 Hb_003964_090--Hb_000656_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0282341 0.0216162 0.012667 0.00423035 0.016024 0.129467
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.038814 0.0610888 0 0.0443942 0.0217637

CAGE analysis