Hb_005839_060

Information

Type -
Description -
Location Contig5839: 52360-57244
Sequence    

Annotation

kegg
ID rcu:RCOM_0688720
description hypothetical protein
nr
ID XP_012091201.1
description PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
swissprot
ID O22892
description Uncharacterized protein At2g40430 OS=Arabidopsis thaliana GN=At2g40430 PE=1 SV=2
trembl
ID A0A067JCY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03362 PE=4 SV=1
Gene Ontology
ID GO:0005622
description PREDICTED: uncharacterized protein At2g40430 isoform X2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49900: 52675-57243 , PASA_asmbl_49901: 53693-54046 , PASA_asmbl_49902: 54065-54293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005839_060 0.0 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
2 Hb_000703_220 0.0566394052 - - PREDICTED: 50S ribosomal protein L1, chloroplastic [Jatropha curcas]
3 Hb_000166_110 0.0764568152 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
4 Hb_004204_020 0.0782764166 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
5 Hb_009133_010 0.0847644013 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
6 Hb_011689_020 0.0857646728 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_003673_060 0.0866759333 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
8 Hb_002805_070 0.092757211 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
9 Hb_001289_080 0.0962632052 - - PREDICTED: protein YLS9-like [Jatropha curcas]
10 Hb_002079_010 0.096638125 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
11 Hb_000889_020 0.099150611 - - ribosome biogenesis protein brix, putative [Ricinus communis]
12 Hb_011794_060 0.0996847014 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_090804_010 0.0999214905 - - ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_000179_020 0.1019378248 - - amidase, putative [Ricinus communis]
15 Hb_000429_120 0.1025893645 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
16 Hb_001771_090 0.1041448784 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]
17 Hb_012490_030 0.1051527223 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
18 Hb_006692_030 0.1070058905 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
19 Hb_006400_060 0.1075546517 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
20 Hb_000483_200 0.107690617 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005839_060 Hb_005839_060 Hb_000703_220 Hb_000703_220 Hb_005839_060--Hb_000703_220 Hb_000166_110 Hb_000166_110 Hb_005839_060--Hb_000166_110 Hb_004204_020 Hb_004204_020 Hb_005839_060--Hb_004204_020 Hb_009133_010 Hb_009133_010 Hb_005839_060--Hb_009133_010 Hb_011689_020 Hb_011689_020 Hb_005839_060--Hb_011689_020 Hb_003673_060 Hb_003673_060 Hb_005839_060--Hb_003673_060 Hb_000703_220--Hb_004204_020 Hb_000703_220--Hb_009133_010 Hb_000703_220--Hb_011689_020 Hb_000703_220--Hb_000166_110 Hb_004370_030 Hb_004370_030 Hb_000703_220--Hb_004370_030 Hb_000889_020 Hb_000889_020 Hb_000166_110--Hb_000889_020 Hb_002054_040 Hb_002054_040 Hb_000166_110--Hb_002054_040 Hb_000166_110--Hb_004370_030 Hb_001124_160 Hb_001124_160 Hb_000166_110--Hb_001124_160 Hb_000076_120 Hb_000076_120 Hb_000166_110--Hb_000076_120 Hb_002030_030 Hb_002030_030 Hb_004204_020--Hb_002030_030 Hb_002039_010 Hb_002039_010 Hb_004204_020--Hb_002039_010 Hb_000184_130 Hb_000184_130 Hb_004204_020--Hb_000184_130 Hb_003362_040 Hb_003362_040 Hb_004204_020--Hb_003362_040 Hb_090804_010 Hb_090804_010 Hb_004204_020--Hb_090804_010 Hb_006692_030 Hb_006692_030 Hb_009133_010--Hb_006692_030 Hb_001789_240 Hb_001789_240 Hb_009133_010--Hb_001789_240 Hb_004724_190 Hb_004724_190 Hb_009133_010--Hb_004724_190 Hb_063090_010 Hb_063090_010 Hb_009133_010--Hb_063090_010 Hb_009133_010--Hb_000889_020 Hb_002805_070 Hb_002805_070 Hb_011689_020--Hb_002805_070 Hb_000284_110 Hb_000284_110 Hb_011689_020--Hb_000284_110 Hb_011689_020--Hb_000166_110 Hb_005679_050 Hb_005679_050 Hb_011689_020--Hb_005679_050 Hb_006114_030 Hb_006114_030 Hb_003673_060--Hb_006114_030 Hb_000046_440 Hb_000046_440 Hb_003673_060--Hb_000046_440 Hb_012490_030 Hb_012490_030 Hb_003673_060--Hb_012490_030 Hb_000627_030 Hb_000627_030 Hb_003673_060--Hb_000627_030 Hb_011794_060 Hb_011794_060 Hb_003673_060--Hb_011794_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.7807 17.4722 17.9035 16.2697 43.918 89.6053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.6111 37.901 42.6374 59.4888 29.3815

CAGE analysis