Hb_005839_100

Information

Type -
Description -
Location Contig5839: 74095-75252
Sequence    

Annotation

kegg
ID rcu:RCOM_0688760
description APO protein 3, mitochondrial precursor, putative
nr
ID XP_012091197.1
description PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
swissprot
ID Q9XIR4
description APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1
trembl
ID A0A067JD05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03358 PE=4 SV=1
Gene Ontology
ID GO:0005488
description apo protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49905: 75046-75352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005839_100 0.0 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
2 Hb_002783_200 0.1836050428 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
3 Hb_048848_010 0.2159377624 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
4 Hb_007785_010 0.2212987124 - - glutathione peroxidase, putative [Ricinus communis]
5 Hb_003384_070 0.2268875248 - - PREDICTED: methylesterase 17-like [Populus euphratica]
6 Hb_001486_140 0.2284209804 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
7 Hb_001091_030 0.2296146902 - - hypothetical protein AALP_AA1G173500 [Arabis alpina]
8 Hb_000061_380 0.229890368 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003640_030 0.231758965 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
10 Hb_001817_130 0.2359653345 - - PREDICTED: poly [ADP-ribose] polymerase 1 isoform X3 [Cucumis melo]
11 Hb_000165_120 0.24305459 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
12 Hb_002232_150 0.2458587098 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
13 Hb_006269_040 0.249055236 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
14 Hb_000362_090 0.2515614692 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
15 Hb_010270_010 0.2518244424 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_001351_040 0.2535452387 - - PREDICTED: branched-chain-amino-acid aminotransferase 2, chloroplastic-like [Jatropha curcas]
17 Hb_003525_020 0.2536123297 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001584_010 0.2555004171 - - kelch repeat protein, putative [Ricinus communis]
19 Hb_143960_010 0.2555624984 - - -
20 Hb_002235_190 0.2575366831 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005839_100 Hb_005839_100 Hb_002783_200 Hb_002783_200 Hb_005839_100--Hb_002783_200 Hb_048848_010 Hb_048848_010 Hb_005839_100--Hb_048848_010 Hb_007785_010 Hb_007785_010 Hb_005839_100--Hb_007785_010 Hb_003384_070 Hb_003384_070 Hb_005839_100--Hb_003384_070 Hb_001486_140 Hb_001486_140 Hb_005839_100--Hb_001486_140 Hb_001091_030 Hb_001091_030 Hb_005839_100--Hb_001091_030 Hb_002235_190 Hb_002235_190 Hb_002783_200--Hb_002235_190 Hb_000244_280 Hb_000244_280 Hb_002783_200--Hb_000244_280 Hb_000401_010 Hb_000401_010 Hb_002783_200--Hb_000401_010 Hb_007380_040 Hb_007380_040 Hb_002783_200--Hb_007380_040 Hb_000442_130 Hb_000442_130 Hb_002783_200--Hb_000442_130 Hb_003525_020 Hb_003525_020 Hb_048848_010--Hb_003525_020 Hb_000362_090 Hb_000362_090 Hb_048848_010--Hb_000362_090 Hb_048848_010--Hb_001091_030 Hb_010398_010 Hb_010398_010 Hb_048848_010--Hb_010398_010 Hb_000538_190 Hb_000538_190 Hb_048848_010--Hb_000538_190 Hb_001351_040 Hb_001351_040 Hb_048848_010--Hb_001351_040 Hb_003107_020 Hb_003107_020 Hb_007785_010--Hb_003107_020 Hb_003640_030 Hb_003640_030 Hb_007785_010--Hb_003640_030 Hb_011716_110 Hb_011716_110 Hb_007785_010--Hb_011716_110 Hb_029977_050 Hb_029977_050 Hb_007785_010--Hb_029977_050 Hb_003073_170 Hb_003073_170 Hb_007785_010--Hb_003073_170 Hb_039342_010 Hb_039342_010 Hb_007785_010--Hb_039342_010 Hb_011382_050 Hb_011382_050 Hb_003384_070--Hb_011382_050 Hb_141142_010 Hb_141142_010 Hb_003384_070--Hb_141142_010 Hb_003384_070--Hb_001351_040 Hb_000315_030 Hb_000315_030 Hb_003384_070--Hb_000315_030 Hb_101089_010 Hb_101089_010 Hb_003384_070--Hb_101089_010 Hb_000803_100 Hb_000803_100 Hb_003384_070--Hb_000803_100 Hb_001100_030 Hb_001100_030 Hb_001486_140--Hb_001100_030 Hb_004102_050 Hb_004102_050 Hb_001486_140--Hb_004102_050 Hb_147996_010 Hb_147996_010 Hb_001486_140--Hb_147996_010 Hb_000836_610 Hb_000836_610 Hb_001486_140--Hb_000836_610 Hb_006054_020 Hb_006054_020 Hb_001486_140--Hb_006054_020 Hb_001817_130 Hb_001817_130 Hb_001091_030--Hb_001817_130 Hb_001091_030--Hb_010398_010 Hb_159411_010 Hb_159411_010 Hb_001091_030--Hb_159411_010 Hb_001091_030--Hb_000362_090 Hb_001091_030--Hb_007380_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0878486 0.191921 0.110252 0.125892 0.0843417 0.103574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.235862 0

CAGE analysis