Hb_005839_110

Information

Type -
Description -
Location Contig5839: 76040-76799
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06890g
description POPTRDRAFT_547792; hypothetical protein
nr
ID XP_011034702.1
description PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
swissprot
ID Q9LSE7
description Cytochrome b561 and DOMON domain-containing protein At3g25290 OS=Arabidopsis thaliana GN=At3g25290 PE=2 SV=1
trembl
ID I1MR01
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0016021
description cytochrome b561 and domon domain-containing protein at5g47530-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005839_110 0.0 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
2 Hb_000162_140 0.087363377 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
3 Hb_003147_050 0.1082650857 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000061_300 0.1157265895 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
5 Hb_003929_120 0.1158421809 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
6 Hb_001575_020 0.1208387904 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000432_050 0.1235632602 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
8 Hb_000784_030 0.1248179151 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
9 Hb_001616_060 0.129500769 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
10 Hb_003086_060 0.1354481414 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
11 Hb_000196_080 0.135897263 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
12 Hb_001538_140 0.1364147341 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
13 Hb_002078_460 0.1364734969 - - -
14 Hb_005539_240 0.1365988415 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
15 Hb_003938_180 0.1375983414 - - lesion inducing family protein [Populus trichocarpa]
16 Hb_001135_210 0.1396599861 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
17 Hb_007382_150 0.1397930705 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
18 Hb_000562_040 0.1409166435 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
19 Hb_001278_050 0.1422813255 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
20 Hb_000836_130 0.1437768011 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005839_110 Hb_005839_110 Hb_000162_140 Hb_000162_140 Hb_005839_110--Hb_000162_140 Hb_003147_050 Hb_003147_050 Hb_005839_110--Hb_003147_050 Hb_000061_300 Hb_000061_300 Hb_005839_110--Hb_000061_300 Hb_003929_120 Hb_003929_120 Hb_005839_110--Hb_003929_120 Hb_001575_020 Hb_001575_020 Hb_005839_110--Hb_001575_020 Hb_000432_050 Hb_000432_050 Hb_005839_110--Hb_000432_050 Hb_000162_140--Hb_003147_050 Hb_002659_040 Hb_002659_040 Hb_000162_140--Hb_002659_040 Hb_001616_060 Hb_001616_060 Hb_000162_140--Hb_001616_060 Hb_000162_140--Hb_003929_120 Hb_002078_460 Hb_002078_460 Hb_000162_140--Hb_002078_460 Hb_001538_140 Hb_001538_140 Hb_003147_050--Hb_001538_140 Hb_003147_050--Hb_002078_460 Hb_002290_040 Hb_002290_040 Hb_003147_050--Hb_002290_040 Hb_003147_050--Hb_003929_120 Hb_000061_300--Hb_001575_020 Hb_000061_300--Hb_001616_060 Hb_003581_260 Hb_003581_260 Hb_000061_300--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000061_300--Hb_007382_150 Hb_000046_290 Hb_000046_290 Hb_000061_300--Hb_000046_290 Hb_002603_160 Hb_002603_160 Hb_000061_300--Hb_002603_160 Hb_003929_120--Hb_001575_020 Hb_000069_100 Hb_000069_100 Hb_003929_120--Hb_000069_100 Hb_003929_120--Hb_001616_060 Hb_003929_120--Hb_007382_150 Hb_003938_180 Hb_003938_180 Hb_003929_120--Hb_003938_180 Hb_000224_090 Hb_000224_090 Hb_003929_120--Hb_000224_090 Hb_001575_020--Hb_001616_060 Hb_002097_060 Hb_002097_060 Hb_001575_020--Hb_002097_060 Hb_001575_020--Hb_000069_100 Hb_001160_030 Hb_001160_030 Hb_001575_020--Hb_001160_030 Hb_000432_050--Hb_001538_140 Hb_029510_040 Hb_029510_040 Hb_000432_050--Hb_029510_040 Hb_002756_020 Hb_002756_020 Hb_000432_050--Hb_002756_020 Hb_009314_010 Hb_009314_010 Hb_000432_050--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000432_050--Hb_000771_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.39207 0.408878 0.192659 0.140372 0.6841 0.943333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.46047 2.67589 3.59846 0.697172 0.527269

CAGE analysis