Hb_005839_120

Information

Type -
Description -
Location Contig5839: 76814-78820
Sequence    

Annotation

kegg
ID rcu:RCOM_0688770
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012091194.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
swissprot
ID Q56XI1
description Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
trembl
ID B9S4A9
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0688770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005839_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
2 Hb_000953_010 0.0899112 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
3 Hb_000173_400 0.0954964452 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
4 Hb_010710_010 0.0967951071 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
5 Hb_000358_080 0.0995001866 - - Ribonuclease 3 [Gossypium arboreum]
6 Hb_002810_020 0.1002931381 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
7 Hb_000490_030 0.1012775912 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
8 Hb_001538_010 0.1030292109 - - -
9 Hb_025557_010 0.1035487528 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
10 Hb_001141_330 0.1045918642 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
11 Hb_000803_190 0.1058638069 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
12 Hb_000500_040 0.1064401101 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002154_030 0.107386982 - - RNA binding protein, putative [Ricinus communis]
14 Hb_001584_160 0.1075259438 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
15 Hb_005307_030 0.1077174864 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
16 Hb_001720_050 0.1077457284 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
17 Hb_004734_060 0.1087098691 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
18 Hb_000608_120 0.1088214033 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
19 Hb_004129_130 0.1100000072 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000976_150 0.1104701278 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]

Gene co-expression network

sample Hb_005839_120 Hb_005839_120 Hb_000953_010 Hb_000953_010 Hb_005839_120--Hb_000953_010 Hb_000173_400 Hb_000173_400 Hb_005839_120--Hb_000173_400 Hb_010710_010 Hb_010710_010 Hb_005839_120--Hb_010710_010 Hb_000358_080 Hb_000358_080 Hb_005839_120--Hb_000358_080 Hb_002810_020 Hb_002810_020 Hb_005839_120--Hb_002810_020 Hb_000490_030 Hb_000490_030 Hb_005839_120--Hb_000490_030 Hb_000803_190 Hb_000803_190 Hb_000953_010--Hb_000803_190 Hb_004734_060 Hb_004734_060 Hb_000953_010--Hb_004734_060 Hb_000836_360 Hb_000836_360 Hb_000953_010--Hb_000836_360 Hb_000953_010--Hb_000173_400 Hb_033152_080 Hb_033152_080 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_004055_040 Hb_004055_040 Hb_000173_400--Hb_004055_040 Hb_000173_400--Hb_004734_060 Hb_002928_060 Hb_002928_060 Hb_000173_400--Hb_002928_060 Hb_000173_400--Hb_000803_190 Hb_001771_130 Hb_001771_130 Hb_000173_400--Hb_001771_130 Hb_000230_080 Hb_000230_080 Hb_010710_010--Hb_000230_080 Hb_000413_180 Hb_000413_180 Hb_010710_010--Hb_000413_180 Hb_003750_080 Hb_003750_080 Hb_010710_010--Hb_003750_080 Hb_002307_100 Hb_002307_100 Hb_010710_010--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050 Hb_000358_080--Hb_000490_030 Hb_007943_080 Hb_007943_080 Hb_000358_080--Hb_007943_080 Hb_001936_050 Hb_001936_050 Hb_000358_080--Hb_001936_050 Hb_000138_040 Hb_000138_040 Hb_000358_080--Hb_000138_040 Hb_006091_030 Hb_006091_030 Hb_000358_080--Hb_006091_030 Hb_000358_080--Hb_010710_010 Hb_000022_250 Hb_000022_250 Hb_002810_020--Hb_000022_250 Hb_011161_010 Hb_011161_010 Hb_002810_020--Hb_011161_010 Hb_000406_220 Hb_000406_220 Hb_002810_020--Hb_000406_220 Hb_181235_010 Hb_181235_010 Hb_002810_020--Hb_181235_010 Hb_002154_030 Hb_002154_030 Hb_002810_020--Hb_002154_030 Hb_002477_030 Hb_002477_030 Hb_002810_020--Hb_002477_030 Hb_000490_030--Hb_001936_050 Hb_029281_010 Hb_029281_010 Hb_000490_030--Hb_029281_010 Hb_000490_030--Hb_006091_030 Hb_000340_510 Hb_000340_510 Hb_000490_030--Hb_000340_510 Hb_002874_070 Hb_002874_070 Hb_000490_030--Hb_002874_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.01284 2.44894 0.632818 0.421991 3.31387 4.73023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70856 2.56487 3.69013 1.36521 0.33648

CAGE analysis