Hb_005841_050

Information

Type -
Description -
Location Contig5841: 64648-66183
Sequence    

Annotation

kegg
ID tcc:TCM_037029
description F-box family protein
nr
ID XP_012071528.1
description PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
swissprot
ID Q9FDX1
description F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1
trembl
ID A0A067KR56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49913: 64729-66161 , PASA_asmbl_49914: 64782-66161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005841_050 0.0 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
2 Hb_002217_450 0.0835120433 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
3 Hb_146225_010 0.0843834525 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
4 Hb_001638_020 0.0844348237 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_001141_030 0.0898837808 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
6 Hb_017862_010 0.095933304 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
7 Hb_021409_090 0.0964716891 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
8 Hb_001863_400 0.0989952523 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
9 Hb_003938_180 0.1021604758 - - lesion inducing family protein [Populus trichocarpa]
10 Hb_001862_100 0.1031377981 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
11 Hb_003929_120 0.1062112338 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
12 Hb_002097_060 0.1064521595 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
13 Hb_000264_020 0.1072552437 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
14 Hb_076626_010 0.1084027446 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000352_140 0.1088897487 - - -
16 Hb_000069_100 0.1093214192 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001052_030 0.1093875141 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
18 Hb_003994_040 0.1108251016 - - -
19 Hb_003579_030 0.1119221927 - - phosphatase 2C family protein [Populus trichocarpa]
20 Hb_006831_030 0.1123806139 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_005841_050 Hb_005841_050 Hb_002217_450 Hb_002217_450 Hb_005841_050--Hb_002217_450 Hb_146225_010 Hb_146225_010 Hb_005841_050--Hb_146225_010 Hb_001638_020 Hb_001638_020 Hb_005841_050--Hb_001638_020 Hb_001141_030 Hb_001141_030 Hb_005841_050--Hb_001141_030 Hb_017862_010 Hb_017862_010 Hb_005841_050--Hb_017862_010 Hb_021409_090 Hb_021409_090 Hb_005841_050--Hb_021409_090 Hb_002217_450--Hb_001141_030 Hb_003203_040 Hb_003203_040 Hb_002217_450--Hb_003203_040 Hb_003398_120 Hb_003398_120 Hb_002217_450--Hb_003398_120 Hb_002217_450--Hb_021409_090 Hb_001863_400 Hb_001863_400 Hb_002217_450--Hb_001863_400 Hb_001052_030 Hb_001052_030 Hb_146225_010--Hb_001052_030 Hb_000264_020 Hb_000264_020 Hb_146225_010--Hb_000264_020 Hb_003326_020 Hb_003326_020 Hb_146225_010--Hb_003326_020 Hb_000123_160 Hb_000123_160 Hb_146225_010--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_146225_010--Hb_000239_030 Hb_001143_080 Hb_001143_080 Hb_001638_020--Hb_001143_080 Hb_001638_020--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_001638_020--Hb_001998_050 Hb_001248_080 Hb_001248_080 Hb_001638_020--Hb_001248_080 Hb_001638_020--Hb_001141_030 Hb_001141_030--Hb_003203_040 Hb_001109_020 Hb_001109_020 Hb_001141_030--Hb_001109_020 Hb_001141_030--Hb_001143_080 Hb_003455_040 Hb_003455_040 Hb_001141_030--Hb_003455_040 Hb_012753_160 Hb_012753_160 Hb_001141_030--Hb_012753_160 Hb_003994_040 Hb_003994_040 Hb_001141_030--Hb_003994_040 Hb_002603_150 Hb_002603_150 Hb_017862_010--Hb_002603_150 Hb_000069_100 Hb_000069_100 Hb_017862_010--Hb_000069_100 Hb_001123_120 Hb_001123_120 Hb_017862_010--Hb_001123_120 Hb_000212_260 Hb_000212_260 Hb_017862_010--Hb_000212_260 Hb_006831_030 Hb_006831_030 Hb_017862_010--Hb_006831_030 Hb_000224_090 Hb_000224_090 Hb_017862_010--Hb_000224_090 Hb_187083_010 Hb_187083_010 Hb_021409_090--Hb_187083_010 Hb_000199_070 Hb_000199_070 Hb_021409_090--Hb_000199_070 Hb_000236_460 Hb_000236_460 Hb_021409_090--Hb_000236_460 Hb_011161_050 Hb_011161_050 Hb_021409_090--Hb_011161_050 Hb_003561_030 Hb_003561_030 Hb_021409_090--Hb_003561_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.05 16.2708 13.0232 35.2376 41.5413 67.9196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.754 247.365 161.087 28.8614 19.1508

CAGE analysis