Hb_005843_010

Information

Type -
Description -
Location Contig5843: 5261-5818
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11130g
description POPTRDRAFT_562983; hypothetical protein
nr
ID XP_012079219.1
description PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
swissprot
ID Q9ZQE6
description Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1
trembl
ID A0A067K6Q4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12382 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calmodulin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 023_E10.ab1: 5188-5875

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005843_010 0.0 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
2 Hb_005678_020 0.0564575283 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000462_010 0.0621496523 - - hypothetical protein VITISV_041696 [Vitis vinifera]
4 Hb_009315_010 0.0636120646 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
5 Hb_005010_030 0.0718487962 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
6 Hb_000708_020 0.0774253636 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_005066_040 0.0792004437 - - Reticuline oxidase precursor, putative [Ricinus communis]
8 Hb_000661_270 0.0834342759 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
9 Hb_001711_140 0.0843426479 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
10 Hb_036790_110 0.0848273566 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
11 Hb_026549_060 0.0881070176 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_000958_090 0.0933137999 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
13 Hb_001699_110 0.0935017163 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
14 Hb_008727_060 0.0946904984 - - Beta-glucosidase, putative [Ricinus communis]
15 Hb_000749_300 0.0955473374 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
16 Hb_000083_210 0.09727496 - - Major facilitator superfamily protein, putative [Theobroma cacao]
17 Hb_001433_090 0.1018473935 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
18 Hb_005288_100 0.101925616 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
19 Hb_001541_200 0.1079425259 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
20 Hb_002477_190 0.1095055203 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_005843_010 Hb_005843_010 Hb_005678_020 Hb_005678_020 Hb_005843_010--Hb_005678_020 Hb_000462_010 Hb_000462_010 Hb_005843_010--Hb_000462_010 Hb_009315_010 Hb_009315_010 Hb_005843_010--Hb_009315_010 Hb_005010_030 Hb_005010_030 Hb_005843_010--Hb_005010_030 Hb_000708_020 Hb_000708_020 Hb_005843_010--Hb_000708_020 Hb_005066_040 Hb_005066_040 Hb_005843_010--Hb_005066_040 Hb_005678_020--Hb_000462_010 Hb_005678_020--Hb_009315_010 Hb_005678_020--Hb_005010_030 Hb_036790_110 Hb_036790_110 Hb_005678_020--Hb_036790_110 Hb_005678_020--Hb_000708_020 Hb_000462_010--Hb_005010_030 Hb_000462_010--Hb_009315_010 Hb_001711_140 Hb_001711_140 Hb_000462_010--Hb_001711_140 Hb_000462_010--Hb_036790_110 Hb_009315_010--Hb_001711_140 Hb_009315_010--Hb_036790_110 Hb_009315_010--Hb_005010_030 Hb_005010_030--Hb_001711_140 Hb_002477_190 Hb_002477_190 Hb_005010_030--Hb_002477_190 Hb_006615_090 Hb_006615_090 Hb_005010_030--Hb_006615_090 Hb_005914_160 Hb_005914_160 Hb_000708_020--Hb_005914_160 Hb_000389_170 Hb_000389_170 Hb_000708_020--Hb_000389_170 Hb_001699_110 Hb_001699_110 Hb_000708_020--Hb_001699_110 Hb_000708_020--Hb_000462_010 Hb_005066_040--Hb_009315_010 Hb_022092_070 Hb_022092_070 Hb_005066_040--Hb_022092_070 Hb_002119_150 Hb_002119_150 Hb_005066_040--Hb_002119_150 Hb_008518_060 Hb_008518_060 Hb_005066_040--Hb_008518_060 Hb_000739_280 Hb_000739_280 Hb_005066_040--Hb_000739_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171609 18.4506 33.5669 75.7143 0.0909684 0.37174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.112709 0.177132 0 0.510887 127.976

CAGE analysis