Hb_005843_020

Information

Type -
Description -
Location Contig5843: 7085-8765
Sequence    

Annotation

kegg
ID rcu:RCOM_1407430
description multidrug resistance pump, putative
nr
ID XP_002523569.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID A1L1P9
description Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1
trembl
ID B9SC50
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1407430 PE=3 SV=1
Gene Ontology
ID GO:0016021
description multidrug resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49921: 6887-7531 , PASA_asmbl_49922: 7567-7983 , PASA_asmbl_49923: 8044-8892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005843_020 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_006816_240 0.1699549807 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
3 Hb_004690_020 0.1718912649 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
4 Hb_009662_040 0.1826410906 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
5 Hb_005116_090 0.1834529956 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003893_060 0.1858143599 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000635_020 0.1969509441 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001369_490 0.1986111291 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 33 [Jatropha curcas]
9 Hb_001688_090 0.2035356416 - - alcohol dehydrogenase 7 [Vitis vinifera]
10 Hb_026196_020 0.2039289245 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
11 Hb_140627_040 0.2063244778 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
12 Hb_002228_120 0.206856654 - - potassium channel beta, putative [Ricinus communis]
13 Hb_004319_010 0.2085145128 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
14 Hb_001628_060 0.2090670991 - - PREDICTED: beta-galactosidase 13-like isoform X2 [Jatropha curcas]
15 Hb_003464_100 0.2094119809 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
16 Hb_124677_070 0.2104937222 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
17 Hb_188742_010 0.2108906762 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
18 Hb_000742_040 0.2109395683 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
19 Hb_001673_090 0.2109983462 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
20 Hb_000236_210 0.2115048459 - - hypothetical protein JCGZ_01083 [Jatropha curcas]

Gene co-expression network

sample Hb_005843_020 Hb_005843_020 Hb_006816_240 Hb_006816_240 Hb_005843_020--Hb_006816_240 Hb_004690_020 Hb_004690_020 Hb_005843_020--Hb_004690_020 Hb_009662_040 Hb_009662_040 Hb_005843_020--Hb_009662_040 Hb_005116_090 Hb_005116_090 Hb_005843_020--Hb_005116_090 Hb_003893_060 Hb_003893_060 Hb_005843_020--Hb_003893_060 Hb_000635_020 Hb_000635_020 Hb_005843_020--Hb_000635_020 Hb_006816_240--Hb_005116_090 Hb_006816_240--Hb_000635_020 Hb_000236_210 Hb_000236_210 Hb_006816_240--Hb_000236_210 Hb_003544_080 Hb_003544_080 Hb_006816_240--Hb_003544_080 Hb_000997_080 Hb_000997_080 Hb_006816_240--Hb_000997_080 Hb_124677_070 Hb_124677_070 Hb_004690_020--Hb_124677_070 Hb_000802_040 Hb_000802_040 Hb_004690_020--Hb_000802_040 Hb_026196_020 Hb_026196_020 Hb_004690_020--Hb_026196_020 Hb_000742_040 Hb_000742_040 Hb_004690_020--Hb_000742_040 Hb_188742_010 Hb_188742_010 Hb_004690_020--Hb_188742_010 Hb_002999_020 Hb_002999_020 Hb_004690_020--Hb_002999_020 Hb_000666_040 Hb_000666_040 Hb_009662_040--Hb_000666_040 Hb_009662_040--Hb_002999_020 Hb_153258_030 Hb_153258_030 Hb_009662_040--Hb_153258_030 Hb_016734_110 Hb_016734_110 Hb_009662_040--Hb_016734_110 Hb_001623_560 Hb_001623_560 Hb_009662_040--Hb_001623_560 Hb_009662_040--Hb_000742_040 Hb_005116_090--Hb_000635_020 Hb_034713_010 Hb_034713_010 Hb_005116_090--Hb_034713_010 Hb_002228_120 Hb_002228_120 Hb_005116_090--Hb_002228_120 Hb_140627_040 Hb_140627_040 Hb_005116_090--Hb_140627_040 Hb_015292_020 Hb_015292_020 Hb_005116_090--Hb_015292_020 Hb_003893_060--Hb_000236_210 Hb_008406_050 Hb_008406_050 Hb_003893_060--Hb_008406_050 Hb_003464_100 Hb_003464_100 Hb_003893_060--Hb_003464_100 Hb_001269_100 Hb_001269_100 Hb_003893_060--Hb_001269_100 Hb_004732_070 Hb_004732_070 Hb_003893_060--Hb_004732_070 Hb_001246_080 Hb_001246_080 Hb_003893_060--Hb_001246_080 Hb_000635_020--Hb_000236_210 Hb_000635_020--Hb_140627_040 Hb_007100_010 Hb_007100_010 Hb_000635_020--Hb_007100_010 Hb_000635_020--Hb_002228_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0516496 0 0.40531 1.36548 0.0638365 0.0128249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0294012 0 0 0.00922667 0.0484952

CAGE analysis