Hb_005843_040

Information

Type -
Description -
Location Contig5843: 21199-31301
Sequence    

Annotation

kegg
ID rcu:RCOM_1407450
description hypothetical protein
nr
ID XP_012079223.1
description PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12385 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49924: 21233-31479 , PASA_asmbl_49925: 21246-31479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005843_040 0.0 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
2 Hb_000365_060 0.0732205817 - - 5'->3' exoribonuclease, putative [Ricinus communis]
3 Hb_002105_080 0.1066760307 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_009421_030 0.1087722943 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
5 Hb_007904_180 0.1100432592 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
6 Hb_000108_080 0.1165048338 - - PREDICTED: importin-5 [Jatropha curcas]
7 Hb_000640_200 0.1165361241 - - hypothetical protein RCOM_1346600 [Ricinus communis]
8 Hb_000116_280 0.1171526923 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
9 Hb_003866_020 0.1201321753 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006816_300 0.121369928 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
11 Hb_000227_380 0.1231325981 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
12 Hb_003236_010 0.1240889773 - - PREDICTED: uncharacterized protein LOC105635957 [Jatropha curcas]
13 Hb_011798_040 0.1257703322 - - hypothetical protein ZEAMMB73_778895 [Zea mays]
14 Hb_013753_010 0.1279789066 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
15 Hb_012016_020 0.1281514095 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
16 Hb_000206_150 0.1308452693 - - unnamed protein product [Coffea canephora]
17 Hb_001247_140 0.131076307 - - -
18 Hb_007849_020 0.1322089339 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
19 Hb_001141_460 0.1325216078 - - PREDICTED: heat shock 70 kDa protein 8 [Jatropha curcas]
20 Hb_006501_020 0.1339716832 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_005843_040 Hb_005843_040 Hb_000365_060 Hb_000365_060 Hb_005843_040--Hb_000365_060 Hb_002105_080 Hb_002105_080 Hb_005843_040--Hb_002105_080 Hb_009421_030 Hb_009421_030 Hb_005843_040--Hb_009421_030 Hb_007904_180 Hb_007904_180 Hb_005843_040--Hb_007904_180 Hb_000108_080 Hb_000108_080 Hb_005843_040--Hb_000108_080 Hb_000640_200 Hb_000640_200 Hb_005843_040--Hb_000640_200 Hb_000365_060--Hb_002105_080 Hb_000365_060--Hb_007904_180 Hb_007348_030 Hb_007348_030 Hb_000365_060--Hb_007348_030 Hb_013753_010 Hb_013753_010 Hb_000365_060--Hb_013753_010 Hb_003866_020 Hb_003866_020 Hb_000365_060--Hb_003866_020 Hb_006816_300 Hb_006816_300 Hb_002105_080--Hb_006816_300 Hb_007849_020 Hb_007849_020 Hb_002105_080--Hb_007849_020 Hb_000116_280 Hb_000116_280 Hb_002105_080--Hb_000116_280 Hb_005295_040 Hb_005295_040 Hb_002105_080--Hb_005295_040 Hb_000227_380 Hb_000227_380 Hb_002105_080--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_002105_080--Hb_000250_070 Hb_001486_120 Hb_001486_120 Hb_009421_030--Hb_001486_120 Hb_000291_120 Hb_000291_120 Hb_009421_030--Hb_000291_120 Hb_001582_030 Hb_001582_030 Hb_009421_030--Hb_001582_030 Hb_000367_290 Hb_000367_290 Hb_009421_030--Hb_000367_290 Hb_009421_030--Hb_005295_040 Hb_000152_890 Hb_000152_890 Hb_009421_030--Hb_000152_890 Hb_004037_030 Hb_004037_030 Hb_007904_180--Hb_004037_030 Hb_000475_020 Hb_000475_020 Hb_007904_180--Hb_000475_020 Hb_000002_440 Hb_000002_440 Hb_007904_180--Hb_000002_440 Hb_001811_120 Hb_001811_120 Hb_007904_180--Hb_001811_120 Hb_000813_100 Hb_000813_100 Hb_007904_180--Hb_000813_100 Hb_007904_180--Hb_006816_300 Hb_031069_020 Hb_031069_020 Hb_000108_080--Hb_031069_020 Hb_003236_010 Hb_003236_010 Hb_000108_080--Hb_003236_010 Hb_000108_080--Hb_004037_030 Hb_000108_080--Hb_000640_200 Hb_005462_020 Hb_005462_020 Hb_000108_080--Hb_005462_020 Hb_022250_110 Hb_022250_110 Hb_000108_080--Hb_022250_110 Hb_004899_070 Hb_004899_070 Hb_000640_200--Hb_004899_070 Hb_006501_020 Hb_006501_020 Hb_000640_200--Hb_006501_020 Hb_057451_010 Hb_057451_010 Hb_000640_200--Hb_057451_010 Hb_006588_050 Hb_006588_050 Hb_000640_200--Hb_006588_050 Hb_000640_200--Hb_000813_100 Hb_000640_200--Hb_031069_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.8639 88.0606 6.79885 13.3911 134.169 143.298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.1172 13.3422 36.2909 33.3492 26.847

CAGE analysis