Hb_005843_060

Information

Type -
Description -
Location Contig5843: 44545-45575
Sequence    

Annotation

kegg
ID pxb:103941115
description protein FAR-RED ELONGATED HYPOCOTYL 3
nr
ID XP_010260561.1
description PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
swissprot
ID Q9SWG3
description Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1
trembl
ID F6HTM8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0017g01780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49931: 45243-46146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005843_060 0.0 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
2 Hb_125116_020 0.0684793557 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X5 [Populus euphratica]
3 Hb_016835_020 0.1097189639 - - unnamed protein product [Coffea canephora]
4 Hb_003462_170 0.1287032392 - - unnamed protein product [Vitis vinifera]
5 Hb_167457_010 0.130600575 - - hypothetical protein glysoja_045622, partial [Glycine soja]
6 Hb_003186_050 0.1361159085 - - -
7 Hb_029727_010 0.1474740257 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000169_100 0.1684262066 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
9 Hb_094484_010 0.1688765701 - - kinase, putative [Ricinus communis]
10 Hb_011476_010 0.1701044517 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_003030_050 0.1733676647 - - -
12 Hb_004052_060 0.1758162721 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
13 Hb_001981_020 0.1762363577 - - PREDICTED: xanthine dehydrogenase 1-like isoform X1 [Populus euphratica]
14 Hb_151870_010 0.1799734802 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
15 Hb_000567_270 0.1855621686 - - hypothetical protein L484_017162 [Morus notabilis]
16 Hb_003427_040 0.1907381949 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
17 Hb_110737_010 0.1908794814 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
18 Hb_000644_020 0.1913719162 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_004274_010 0.1916229015 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
20 Hb_010964_030 0.1918780716 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]

Gene co-expression network

sample Hb_005843_060 Hb_005843_060 Hb_125116_020 Hb_125116_020 Hb_005843_060--Hb_125116_020 Hb_016835_020 Hb_016835_020 Hb_005843_060--Hb_016835_020 Hb_003462_170 Hb_003462_170 Hb_005843_060--Hb_003462_170 Hb_167457_010 Hb_167457_010 Hb_005843_060--Hb_167457_010 Hb_003186_050 Hb_003186_050 Hb_005843_060--Hb_003186_050 Hb_029727_010 Hb_029727_010 Hb_005843_060--Hb_029727_010 Hb_125116_020--Hb_003462_170 Hb_010964_030 Hb_010964_030 Hb_125116_020--Hb_010964_030 Hb_001981_020 Hb_001981_020 Hb_125116_020--Hb_001981_020 Hb_125116_020--Hb_167457_010 Hb_004052_060 Hb_004052_060 Hb_125116_020--Hb_004052_060 Hb_001369_270 Hb_001369_270 Hb_016835_020--Hb_001369_270 Hb_110737_010 Hb_110737_010 Hb_016835_020--Hb_110737_010 Hb_003030_050 Hb_003030_050 Hb_016835_020--Hb_003030_050 Hb_016835_020--Hb_029727_010 Hb_016835_020--Hb_167457_010 Hb_001699_020 Hb_001699_020 Hb_003462_170--Hb_001699_020 Hb_006455_020 Hb_006455_020 Hb_003462_170--Hb_006455_020 Hb_003462_170--Hb_001981_020 Hb_000644_020 Hb_000644_020 Hb_003462_170--Hb_000644_020 Hb_167457_010--Hb_003186_050 Hb_011476_010 Hb_011476_010 Hb_167457_010--Hb_011476_010 Hb_004274_010 Hb_004274_010 Hb_167457_010--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_167457_010--Hb_001452_150 Hb_000946_130 Hb_000946_130 Hb_167457_010--Hb_000946_130 Hb_003186_050--Hb_011476_010 Hb_003186_050--Hb_004274_010 Hb_003186_050--Hb_001452_150 Hb_003186_050--Hb_000946_130 Hb_003427_040 Hb_003427_040 Hb_003186_050--Hb_003427_040 Hb_000169_100 Hb_000169_100 Hb_029727_010--Hb_000169_100 Hb_001005_040 Hb_001005_040 Hb_029727_010--Hb_001005_040 Hb_017225_030 Hb_017225_030 Hb_029727_010--Hb_017225_030 Hb_001288_050 Hb_001288_050 Hb_029727_010--Hb_001288_050 Hb_000260_730 Hb_000260_730 Hb_029727_010--Hb_000260_730 Hb_002631_270 Hb_002631_270 Hb_029727_010--Hb_002631_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0721524 0.309258 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.849592 1.80967

CAGE analysis