Hb_005843_080

Information

Type transcription factor
Description TF Family: ERF
Location Contig5843: 78530-79141
Sequence    

Annotation

kegg
ID rcu:RCOM_1407560
description DNA binding protein, putative
nr
ID XP_002523572.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q6K7E6
description Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1
trembl
ID B9SC53
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1407560 PE=4 SV=1
Gene Ontology
ID GO:0044249
description ethylene-responsive transcription factor erf109-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005843_080 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_117602_010 0.0791221566 - - dimethylaniline monooxygenase, putative [Ricinus communis]
3 Hb_001565_050 0.0798786187 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
4 Hb_015978_040 0.0807009892 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]
5 Hb_000086_600 0.0833452565 - - -
6 Hb_034132_010 0.0886978462 - - hypothetical protein B456_007G015400 [Gossypium raimondii]
7 Hb_142691_010 0.0989080431 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
8 Hb_012691_040 0.1033664544 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
9 Hb_005618_020 0.1050404911 - - hypothetical protein RCOM_1342750 [Ricinus communis]
10 Hb_022768_010 0.1070550025 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
11 Hb_147137_020 0.1074564977 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
12 Hb_008579_010 0.1074976674 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
13 Hb_106810_010 0.1076487704 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_005725_180 0.1117964687 - - -
15 Hb_002486_030 0.1136448522 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
16 Hb_001514_110 0.1139705607 - - conserved hypothetical protein [Ricinus communis]
17 Hb_032966_010 0.1146325564 - - receptor serine/threonine kinase, putative [Ricinus communis]
18 Hb_073423_010 0.1182822731 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_031862_150 0.1209227913 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
20 Hb_104855_020 0.123120931 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005843_080 Hb_005843_080 Hb_117602_010 Hb_117602_010 Hb_005843_080--Hb_117602_010 Hb_001565_050 Hb_001565_050 Hb_005843_080--Hb_001565_050 Hb_015978_040 Hb_015978_040 Hb_005843_080--Hb_015978_040 Hb_000086_600 Hb_000086_600 Hb_005843_080--Hb_000086_600 Hb_034132_010 Hb_034132_010 Hb_005843_080--Hb_034132_010 Hb_142691_010 Hb_142691_010 Hb_005843_080--Hb_142691_010 Hb_117602_010--Hb_000086_600 Hb_117602_010--Hb_001565_050 Hb_189242_010 Hb_189242_010 Hb_117602_010--Hb_189242_010 Hb_117602_010--Hb_034132_010 Hb_117602_010--Hb_142691_010 Hb_001565_050--Hb_142691_010 Hb_012691_040 Hb_012691_040 Hb_001565_050--Hb_012691_040 Hb_001565_050--Hb_034132_010 Hb_001565_050--Hb_015978_040 Hb_008579_010 Hb_008579_010 Hb_001565_050--Hb_008579_010 Hb_001514_110 Hb_001514_110 Hb_001565_050--Hb_001514_110 Hb_005725_180 Hb_005725_180 Hb_015978_040--Hb_005725_180 Hb_015978_040--Hb_034132_010 Hb_022768_010 Hb_022768_010 Hb_015978_040--Hb_022768_010 Hb_032966_010 Hb_032966_010 Hb_015978_040--Hb_032966_010 Hb_005843_070 Hb_005843_070 Hb_015978_040--Hb_005843_070 Hb_005618_020 Hb_005618_020 Hb_000086_600--Hb_005618_020 Hb_009707_010 Hb_009707_010 Hb_000086_600--Hb_009707_010 Hb_114932_010 Hb_114932_010 Hb_000086_600--Hb_114932_010 Hb_147137_020 Hb_147137_020 Hb_000086_600--Hb_147137_020 Hb_034132_010--Hb_022768_010 Hb_034132_010--Hb_005725_180 Hb_142691_010--Hb_008579_010 Hb_002486_030 Hb_002486_030 Hb_142691_010--Hb_002486_030 Hb_142691_010--Hb_012691_040 Hb_073423_010 Hb_073423_010 Hb_142691_010--Hb_073423_010 Hb_142691_010--Hb_001514_110 Hb_104855_020 Hb_104855_020 Hb_142691_010--Hb_104855_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.95644 2.00982 0.900869 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0980576 0 0 0.0315686 0

CAGE analysis