Hb_005843_100

Information

Type -
Description -
Location Contig5843: 86656-89523
Sequence    

Annotation

kegg
ID pmum:103339881
description pentatricopeptide repeat-containing protein At3g16610-like
nr
ID XP_012079224.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
swissprot
ID Q9SVP7
description Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
trembl
ID A0A067K6Q7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12387 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49935: 86882-87177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005843_100 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
2 Hb_002813_050 0.1066762253 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
3 Hb_001318_030 0.1072886205 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
4 Hb_096224_040 0.1106595992 - - PREDICTED: probable nucleoredoxin 3 isoform X1 [Jatropha curcas]
5 Hb_005843_150 0.1139016099 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
6 Hb_012395_220 0.1157560323 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
7 Hb_002374_310 0.1194599746 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
8 Hb_012807_050 0.1213241691 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
9 Hb_006582_020 0.1223660768 - - Zinc finger protein ZFPM1 [Theobroma cacao]
10 Hb_005015_070 0.1232941399 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
11 Hb_004807_030 0.1234349904 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
12 Hb_001141_390 0.1321780455 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
13 Hb_000237_080 0.1322307433 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
14 Hb_027506_020 0.1343757123 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
15 Hb_000680_050 0.1343970366 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
16 Hb_004032_270 0.1359106744 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
17 Hb_000261_490 0.1367216308 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
18 Hb_000457_170 0.1392784406 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
19 Hb_005551_050 0.1411747353 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
20 Hb_002435_110 0.1415981213 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005843_100 Hb_005843_100 Hb_002813_050 Hb_002813_050 Hb_005843_100--Hb_002813_050 Hb_001318_030 Hb_001318_030 Hb_005843_100--Hb_001318_030 Hb_096224_040 Hb_096224_040 Hb_005843_100--Hb_096224_040 Hb_005843_150 Hb_005843_150 Hb_005843_100--Hb_005843_150 Hb_012395_220 Hb_012395_220 Hb_005843_100--Hb_012395_220 Hb_002374_310 Hb_002374_310 Hb_005843_100--Hb_002374_310 Hb_000000_370 Hb_000000_370 Hb_002813_050--Hb_000000_370 Hb_000859_060 Hb_000859_060 Hb_002813_050--Hb_000859_060 Hb_004785_060 Hb_004785_060 Hb_002813_050--Hb_004785_060 Hb_002813_050--Hb_012395_220 Hb_001141_390 Hb_001141_390 Hb_002813_050--Hb_001141_390 Hb_012807_050 Hb_012807_050 Hb_002813_050--Hb_012807_050 Hb_000237_080 Hb_000237_080 Hb_001318_030--Hb_000237_080 Hb_004032_270 Hb_004032_270 Hb_001318_030--Hb_004032_270 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_009838_050 Hb_009838_050 Hb_001318_030--Hb_009838_050 Hb_000976_150 Hb_000976_150 Hb_001318_030--Hb_000976_150 Hb_027506_020 Hb_027506_020 Hb_096224_040--Hb_027506_020 Hb_096224_040--Hb_005843_150 Hb_096224_040--Hb_001141_390 Hb_096224_040--Hb_002813_050 Hb_000665_010 Hb_000665_010 Hb_096224_040--Hb_000665_010 Hb_000497_180 Hb_000497_180 Hb_005843_150--Hb_000497_180 Hb_005843_150--Hb_000237_080 Hb_005843_150--Hb_002813_050 Hb_005843_150--Hb_001318_030 Hb_012395_220--Hb_012807_050 Hb_000680_050 Hb_000680_050 Hb_012395_220--Hb_000680_050 Hb_010172_090 Hb_010172_090 Hb_012395_220--Hb_010172_090 Hb_000500_040 Hb_000500_040 Hb_012395_220--Hb_000500_040 Hb_012395_220--Hb_001141_390 Hb_002374_310--Hb_001141_390 Hb_001856_230 Hb_001856_230 Hb_002374_310--Hb_001856_230 Hb_001621_150 Hb_001621_150 Hb_002374_310--Hb_001621_150 Hb_000181_070 Hb_000181_070 Hb_002374_310--Hb_000181_070 Hb_005015_070 Hb_005015_070 Hb_002374_310--Hb_005015_070 Hb_007532_030 Hb_007532_030 Hb_002374_310--Hb_007532_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4862 3.00993 0.234787 0.373098 0.997147 1.29421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24919 1.72626 2.26847 0.608773 0.357775

CAGE analysis