Hb_005843_140

Information

Type -
Description -
Location Contig5843: 106845-115533
Sequence    

Annotation

kegg
ID rcu:RCOM_1407700
description Red chlorophyll catabolite reductase, chloroplast precursor, putative
nr
ID XP_002523576.1
description Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q8LDU4
description Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2
trembl
ID B9SC57
description Red chlorophyll catabolite reductase, chloroplast, putative OS=Ricinus communis GN=RCOM_1407700 PE=4 SV=1
Gene Ontology
ID GO:0005739
description red chlorophyll catabolite chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49943: 110860-111036 , PASA_asmbl_49944: 111706-111835 , PASA_asmbl_49945: 111998-112201 , PASA_asmbl_49946: 114010-115493
cDNA
(Sanger)
(ID:Location)		 003_H02.ab1: 114012-115493 , 007_H14.ab1: 114012-115493 , 011_L19.ab1: 114012-115493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005843_140 0.0 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
2 Hb_006198_070 0.0537723985 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
3 Hb_044653_040 0.065286069 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
4 Hb_003669_020 0.0678929981 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
5 Hb_002968_040 0.0696701111 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
6 Hb_006355_040 0.0712499873 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
7 Hb_000505_130 0.0843870655 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
8 Hb_000424_200 0.0880854204 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
9 Hb_001188_030 0.0884992048 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
10 Hb_002232_060 0.0885803638 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
11 Hb_001718_030 0.0890303481 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
12 Hb_000733_180 0.090312476 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
13 Hb_000310_020 0.0910829933 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
14 Hb_000676_390 0.0916368406 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
15 Hb_001931_010 0.0930366429 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
16 Hb_000419_020 0.0933978209 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_002534_100 0.0980671683 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
18 Hb_000403_070 0.1020574045 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_158445_010 0.1026316172 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
20 Hb_002060_010 0.102819092 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005843_140 Hb_005843_140 Hb_006198_070 Hb_006198_070 Hb_005843_140--Hb_006198_070 Hb_044653_040 Hb_044653_040 Hb_005843_140--Hb_044653_040 Hb_003669_020 Hb_003669_020 Hb_005843_140--Hb_003669_020 Hb_002968_040 Hb_002968_040 Hb_005843_140--Hb_002968_040 Hb_006355_040 Hb_006355_040 Hb_005843_140--Hb_006355_040 Hb_000505_130 Hb_000505_130 Hb_005843_140--Hb_000505_130 Hb_026527_050 Hb_026527_050 Hb_006198_070--Hb_026527_050 Hb_006198_070--Hb_003669_020 Hb_003540_240 Hb_003540_240 Hb_006198_070--Hb_003540_240 Hb_006198_070--Hb_006355_040 Hb_004057_010 Hb_004057_010 Hb_006198_070--Hb_004057_010 Hb_044653_040--Hb_000505_130 Hb_044653_040--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_044653_040--Hb_002534_100 Hb_000310_020 Hb_000310_020 Hb_044653_040--Hb_000310_020 Hb_002303_020 Hb_002303_020 Hb_044653_040--Hb_002303_020 Hb_003669_020--Hb_000310_020 Hb_011512_070 Hb_011512_070 Hb_003669_020--Hb_011512_070 Hb_003669_020--Hb_000505_130 Hb_000946_090 Hb_000946_090 Hb_002968_040--Hb_000946_090 Hb_012799_170 Hb_012799_170 Hb_002968_040--Hb_012799_170 Hb_002968_040--Hb_044653_040 Hb_003622_030 Hb_003622_030 Hb_002968_040--Hb_003622_030 Hb_002968_040--Hb_006355_040 Hb_001718_030 Hb_001718_030 Hb_006355_040--Hb_001718_030 Hb_001188_030 Hb_001188_030 Hb_006355_040--Hb_001188_030 Hb_006355_040--Hb_003669_020 Hb_000505_130--Hb_000310_020 Hb_001931_010 Hb_001931_010 Hb_000505_130--Hb_001931_010 Hb_000221_190 Hb_000221_190 Hb_000505_130--Hb_000221_190 Hb_003124_150 Hb_003124_150 Hb_000505_130--Hb_003124_150 Hb_006326_040 Hb_006326_040 Hb_000505_130--Hb_006326_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9802 15.0612 28.3085 23.1283 9.489 12.3237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0281 56.6105 28.4024 18.4016 29.2043

CAGE analysis