Hb_005846_020

Information

Type -
Description -
Location Contig5846: 35351-35962
Sequence    

Annotation

kegg
ID rcu:RCOM_0178200
description tubulin folding cofactor C, putative
nr
ID XP_012088423.1
description PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
swissprot
ID Q9SMR2
description Tubulin-folding cofactor C OS=Arabidopsis thaliana GN=TFCC PE=1 SV=1
trembl
ID A0A067LPK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24029 PE=4 SV=1
Gene Ontology
ID GO:0007023
description tubulin-folding cofactor c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49954: 36194-39753
cDNA
(Sanger)
(ID:Location)		 011_M08.ab1: 36205-39728

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005846_020 0.0 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
2 Hb_152453_010 0.0627763967 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
3 Hb_000976_080 0.0689875306 - - hypothetical protein VITISV_034376 [Vitis vinifera]
4 Hb_005803_010 0.0977049807 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000617_220 0.0985588692 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
6 Hb_005695_060 0.0994253332 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
7 Hb_003091_010 0.103090791 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
8 Hb_002783_120 0.1094414393 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
9 Hb_001001_020 0.1094883226 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
10 Hb_004450_060 0.1106121999 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
11 Hb_000345_530 0.1131131038 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
12 Hb_001754_240 0.1131599874 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
13 Hb_001474_030 0.1176813607 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
14 Hb_035318_010 0.1178000421 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
15 Hb_001910_020 0.1211380462 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
16 Hb_011848_010 0.121479884 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
17 Hb_004701_030 0.1220108724 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
18 Hb_063409_020 0.1229004606 - - Calcium-binding protein, putative [Ricinus communis]
19 Hb_000392_050 0.1230963437 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
20 Hb_001894_030 0.1239077323 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]

Gene co-expression network

sample Hb_005846_020 Hb_005846_020 Hb_152453_010 Hb_152453_010 Hb_005846_020--Hb_152453_010 Hb_000976_080 Hb_000976_080 Hb_005846_020--Hb_000976_080 Hb_005803_010 Hb_005803_010 Hb_005846_020--Hb_005803_010 Hb_000617_220 Hb_000617_220 Hb_005846_020--Hb_000617_220 Hb_005695_060 Hb_005695_060 Hb_005846_020--Hb_005695_060 Hb_003091_010 Hb_003091_010 Hb_005846_020--Hb_003091_010 Hb_152453_010--Hb_000976_080 Hb_001910_020 Hb_001910_020 Hb_152453_010--Hb_001910_020 Hb_000345_530 Hb_000345_530 Hb_152453_010--Hb_000345_530 Hb_152453_010--Hb_000617_220 Hb_000392_050 Hb_000392_050 Hb_152453_010--Hb_000392_050 Hb_001001_020 Hb_001001_020 Hb_000976_080--Hb_001001_020 Hb_000976_080--Hb_000345_530 Hb_000976_080--Hb_005695_060 Hb_002783_120 Hb_002783_120 Hb_000976_080--Hb_002783_120 Hb_005803_010--Hb_000345_530 Hb_018790_070 Hb_018790_070 Hb_005803_010--Hb_018790_070 Hb_005803_010--Hb_000976_080 Hb_005803_010--Hb_152453_010 Hb_002249_160 Hb_002249_160 Hb_005803_010--Hb_002249_160 Hb_000617_220--Hb_003091_010 Hb_011848_010 Hb_011848_010 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_005695_060--Hb_002783_120 Hb_005695_060--Hb_001001_020 Hb_000453_190 Hb_000453_190 Hb_005695_060--Hb_000453_190 Hb_005695_060--Hb_152453_010 Hb_003091_010--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_000359_330 Hb_000359_330 Hb_003091_010--Hb_000359_330 Hb_004450_060 Hb_004450_060 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.41543 1.26302 2.53074 0.738501 4.45442 4.31753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07863 1.54136 0.946247 1.04177 0.299222

CAGE analysis