Hb_005846_040

Information

Type -
Description -
Location Contig5846: 53680-59826
Sequence    

Annotation

kegg
ID pop:POPTR_0007s05400g
description POPTRDRAFT_718773; UBIQUITIN-SPECIFIC PROTEASE 4 family protein
nr
ID XP_011022801.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
swissprot
ID Q8LAM0
description Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana GN=UBP4 PE=1 SV=2
trembl
ID B9HFG1
description Ubiquitin carboxyl-terminal hydrolase OS=Populus trichocarpa GN=POPTR_0007s05400g PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49956: 54032-59726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005846_040 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
2 Hb_003151_040 0.0433049201 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
3 Hb_000373_070 0.051919821 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
4 Hb_000030_030 0.0535962136 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
5 Hb_001245_100 0.0569719531 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]
6 Hb_003787_010 0.0591923103 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
7 Hb_004116_190 0.0603872204 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
8 Hb_000703_350 0.0619137462 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
9 Hb_004109_170 0.0629423775 - - PREDICTED: probable ribokinase [Jatropha curcas]
10 Hb_001766_060 0.0639048715 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006059_050 0.0648077652 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
12 Hb_006615_240 0.0657755912 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
13 Hb_172426_040 0.0658431156 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
14 Hb_005779_060 0.0665353131 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
15 Hb_000417_040 0.0675677426 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
16 Hb_000032_270 0.0678071864 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
17 Hb_012019_010 0.0688323818 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
18 Hb_000676_180 0.0695499446 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
19 Hb_000331_550 0.0699929792 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
20 Hb_000876_070 0.0701669098 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_005846_040 Hb_005846_040 Hb_003151_040 Hb_003151_040 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_005846_040--Hb_004116_190 Hb_001766_060 Hb_001766_060 Hb_003151_040--Hb_001766_060 Hb_003151_040--Hb_000373_070 Hb_006059_050 Hb_006059_050 Hb_003151_040--Hb_006059_050 Hb_000152_500 Hb_000152_500 Hb_003151_040--Hb_000152_500 Hb_000001_060 Hb_000001_060 Hb_003151_040--Hb_000001_060 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_001163_050 Hb_001163_050 Hb_000373_070--Hb_001163_050 Hb_000331_550 Hb_000331_550 Hb_000373_070--Hb_000331_550 Hb_002078_350 Hb_002078_350 Hb_000373_070--Hb_002078_350 Hb_001703_060 Hb_001703_060 Hb_000030_030--Hb_001703_060 Hb_003502_060 Hb_003502_060 Hb_000030_030--Hb_003502_060 Hb_002232_410 Hb_002232_410 Hb_000030_030--Hb_002232_410 Hb_000030_030--Hb_003151_040 Hb_168978_010 Hb_168978_010 Hb_000030_030--Hb_168978_010 Hb_001245_100--Hb_001766_060 Hb_000667_070 Hb_000667_070 Hb_001245_100--Hb_000667_070 Hb_027380_050 Hb_027380_050 Hb_001245_100--Hb_027380_050 Hb_001245_100--Hb_003151_040 Hb_002046_180 Hb_002046_180 Hb_001245_100--Hb_002046_180 Hb_000217_030 Hb_000217_030 Hb_003787_010--Hb_000217_030 Hb_002995_020 Hb_002995_020 Hb_003787_010--Hb_002995_020 Hb_172426_040 Hb_172426_040 Hb_003787_010--Hb_172426_040 Hb_000020_060 Hb_000020_060 Hb_003787_010--Hb_000020_060 Hb_015279_010 Hb_015279_010 Hb_003787_010--Hb_015279_010 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_004116_190--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_004116_190--Hb_000656_240 Hb_004116_190--Hb_000020_060 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5456 11.5306 10.5855 12.9598 10.9424 11.9755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5576 23.4723 16.9533 11.3307 8.34143

CAGE analysis