Hb_005846_050

Information

Type -
Description -
Location Contig5846: 60179-68590
Sequence    

Annotation

kegg
ID cic:CICLE_v10024764mg
description hypothetical protein
nr
ID XP_012088869.1
description PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
swissprot
ID Q8GSA7
description Calmodulin-binding transcription activator 3 OS=Arabidopsis thaliana GN=CMTA3 PE=1 SV=1
trembl
ID A0A067LHJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24032 PE=4 SV=1
Gene Ontology
ID GO:0006950
description calmodulin-binding transcription activator 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49958: 64002-64571 , PASA_asmbl_49959: 64621-64942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005846_050 0.0 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
2 Hb_000406_210 0.0554307942 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
3 Hb_002552_040 0.0742500742 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
4 Hb_001587_030 0.0760830383 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
5 Hb_008289_040 0.0770102286 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
6 Hb_065500_020 0.0806830649 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
7 Hb_001504_060 0.0828446744 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
8 Hb_065968_010 0.0883251863 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
9 Hb_000101_390 0.0885686693 - - PREDICTED: mucin-5B [Jatropha curcas]
10 Hb_002284_100 0.0893234386 - - ribophorin, putative [Ricinus communis]
11 Hb_011377_040 0.0896128402 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
12 Hb_001703_050 0.091762684 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
13 Hb_001226_130 0.0919138222 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
14 Hb_000815_300 0.092103661 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
15 Hb_027760_060 0.0927586696 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
16 Hb_000009_030 0.0931609876 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
17 Hb_002687_180 0.0938240767 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
18 Hb_031527_080 0.0964029215 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
19 Hb_003038_040 0.096638341 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
20 Hb_003758_010 0.0971766736 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005846_050 Hb_005846_050 Hb_000406_210 Hb_000406_210 Hb_005846_050--Hb_000406_210 Hb_002552_040 Hb_002552_040 Hb_005846_050--Hb_002552_040 Hb_001587_030 Hb_001587_030 Hb_005846_050--Hb_001587_030 Hb_008289_040 Hb_008289_040 Hb_005846_050--Hb_008289_040 Hb_065500_020 Hb_065500_020 Hb_005846_050--Hb_065500_020 Hb_001504_060 Hb_001504_060 Hb_005846_050--Hb_001504_060 Hb_001159_060 Hb_001159_060 Hb_000406_210--Hb_001159_060 Hb_000815_300 Hb_000815_300 Hb_000406_210--Hb_000815_300 Hb_000406_210--Hb_008289_040 Hb_000103_290 Hb_000103_290 Hb_000406_210--Hb_000103_290 Hb_000406_210--Hb_002552_040 Hb_002552_040--Hb_000815_300 Hb_002687_180 Hb_002687_180 Hb_002552_040--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_002552_040--Hb_004228_120 Hb_001279_190 Hb_001279_190 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_002552_040--Hb_006970_020 Hb_001226_130 Hb_001226_130 Hb_001587_030--Hb_001226_130 Hb_000649_060 Hb_000649_060 Hb_001587_030--Hb_000649_060 Hb_001587_030--Hb_065500_020 Hb_060980_010 Hb_060980_010 Hb_001587_030--Hb_060980_010 Hb_004837_280 Hb_004837_280 Hb_001587_030--Hb_004837_280 Hb_000890_070 Hb_000890_070 Hb_001587_030--Hb_000890_070 Hb_021165_010 Hb_021165_010 Hb_008289_040--Hb_021165_010 Hb_016172_030 Hb_016172_030 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_008289_040--Hb_065500_020 Hb_000703_330 Hb_000703_330 Hb_008289_040--Hb_000703_330 Hb_065500_020--Hb_060980_010 Hb_002749_060 Hb_002749_060 Hb_065500_020--Hb_002749_060 Hb_065500_020--Hb_016172_030 Hb_011819_020 Hb_011819_020 Hb_065500_020--Hb_011819_020 Hb_065500_020--Hb_021165_010 Hb_001117_110 Hb_001117_110 Hb_001504_060--Hb_001117_110 Hb_000009_030 Hb_000009_030 Hb_001504_060--Hb_000009_030 Hb_000101_390 Hb_000101_390 Hb_001504_060--Hb_000101_390 Hb_106890_010 Hb_106890_010 Hb_001504_060--Hb_106890_010 Hb_160608_010 Hb_160608_010 Hb_001504_060--Hb_160608_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.397648 1.18442 2.17621 2.10769 1.03722 0.848899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.668973 0.552734 1.0548 2.14712 1.84834

CAGE analysis