Hb_005847_060

Information

Type -
Description -
Location Contig5847: 59629-64269
Sequence    

Annotation

kegg
ID pop:POPTR_0006s02920g
description POPTRDRAFT_560310; hypothetical protein
nr
ID XP_002308849.1
description hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
swissprot
ID P11891
description 50S ribosomal protein 5, chloroplastic OS=Pisum sativum GN=PSRP5 PE=2 SV=1
trembl
ID B9HDS4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02920g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49960: 59637-64177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005847_060 0.0 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
2 Hb_011716_130 0.0607879861 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
3 Hb_001662_150 0.0752322972 - - Scaffold attachment factor B1 [Medicago truncatula]
4 Hb_001922_170 0.0788237576 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
5 Hb_002811_130 0.0807754993 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
6 Hb_001157_020 0.0833985016 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
7 Hb_001579_270 0.0847605731 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
8 Hb_007163_070 0.0855965664 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
9 Hb_006570_140 0.0861013775 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
10 Hb_004837_030 0.0892169231 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
11 Hb_005306_170 0.0901070974 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
12 Hb_000599_300 0.0907672674 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
13 Hb_054865_120 0.0916504195 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
14 Hb_000465_090 0.0922683838 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
15 Hb_010361_010 0.0926890573 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
16 Hb_009694_010 0.0932294294 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001971_010 0.0937459378 - - F23N19.4 [Arabidopsis thaliana]
18 Hb_000329_200 0.0938003685 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
19 Hb_011021_020 0.0941140223 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
20 Hb_000054_090 0.0941574989 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005847_060 Hb_005847_060 Hb_011716_130 Hb_011716_130 Hb_005847_060--Hb_011716_130 Hb_001662_150 Hb_001662_150 Hb_005847_060--Hb_001662_150 Hb_001922_170 Hb_001922_170 Hb_005847_060--Hb_001922_170 Hb_002811_130 Hb_002811_130 Hb_005847_060--Hb_002811_130 Hb_001157_020 Hb_001157_020 Hb_005847_060--Hb_001157_020 Hb_001579_270 Hb_001579_270 Hb_005847_060--Hb_001579_270 Hb_011716_130--Hb_002811_130 Hb_000815_070 Hb_000815_070 Hb_011716_130--Hb_000815_070 Hb_000224_160 Hb_000224_160 Hb_011716_130--Hb_000224_160 Hb_002600_090 Hb_002600_090 Hb_011716_130--Hb_002600_090 Hb_012022_150 Hb_012022_150 Hb_011716_130--Hb_012022_150 Hb_007163_070 Hb_007163_070 Hb_001662_150--Hb_007163_070 Hb_003226_140 Hb_003226_140 Hb_001662_150--Hb_003226_140 Hb_000329_200 Hb_000329_200 Hb_001662_150--Hb_000329_200 Hb_005697_060 Hb_005697_060 Hb_001662_150--Hb_005697_060 Hb_001662_150--Hb_001157_020 Hb_005306_170 Hb_005306_170 Hb_001662_150--Hb_005306_170 Hb_054865_120 Hb_054865_120 Hb_001922_170--Hb_054865_120 Hb_006570_140 Hb_006570_140 Hb_001922_170--Hb_006570_140 Hb_001922_170--Hb_001579_270 Hb_002820_050 Hb_002820_050 Hb_001922_170--Hb_002820_050 Hb_000094_330 Hb_000094_330 Hb_001922_170--Hb_000094_330 Hb_000289_110 Hb_000289_110 Hb_002811_130--Hb_000289_110 Hb_002014_030 Hb_002014_030 Hb_002811_130--Hb_002014_030 Hb_006274_030 Hb_006274_030 Hb_002811_130--Hb_006274_030 Hb_000061_210 Hb_000061_210 Hb_002811_130--Hb_000061_210 Hb_028227_020 Hb_028227_020 Hb_001157_020--Hb_028227_020 Hb_012725_050 Hb_012725_050 Hb_001157_020--Hb_012725_050 Hb_001105_030 Hb_001105_030 Hb_001157_020--Hb_001105_030 Hb_001821_010 Hb_001821_010 Hb_001157_020--Hb_001821_010 Hb_001140_370 Hb_001140_370 Hb_001157_020--Hb_001140_370 Hb_000815_320 Hb_000815_320 Hb_001157_020--Hb_000815_320 Hb_007672_060 Hb_007672_060 Hb_001579_270--Hb_007672_060 Hb_000599_300 Hb_000599_300 Hb_001579_270--Hb_000599_300 Hb_000054_090 Hb_000054_090 Hb_001579_270--Hb_000054_090 Hb_001579_270--Hb_054865_120 Hb_033594_120 Hb_033594_120 Hb_001579_270--Hb_033594_120 Hb_003633_030 Hb_003633_030 Hb_001579_270--Hb_003633_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.4422 5.99867 21.6726 17.6428 19.8926 25.7997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.9559 33.148 19.5957 15.9924 27.4753

CAGE analysis