Hb_005854_040

Information

Type -
Description -
Location Contig5854: 63719-67907
Sequence    

Annotation

kegg
ID rcu:RCOM_1202710
description hypothetical protein
nr
ID XP_002531341.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q94AA1
description UNC93-like protein 3 OS=Arabidopsis thaliana GN=At3g09470 PE=2 SV=1
trembl
ID B9SZC2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1202710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49967: 63720-67863 , PASA_asmbl_49968: 63720-64726
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005854_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000027_200 0.0559610771 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
3 Hb_007317_020 0.0798957201 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
4 Hb_002687_200 0.0807845102 - - conserved hypothetical protein [Ricinus communis]
5 Hb_021977_010 0.0823087485 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
6 Hb_001226_130 0.0832170672 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
7 Hb_015884_020 0.084338693 - - PREDICTED: protein PIR [Jatropha curcas]
8 Hb_001235_130 0.0875574779 - - -
9 Hb_003490_060 0.088266639 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
10 Hb_001504_060 0.0887240913 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
11 Hb_009296_020 0.0890901291 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
12 Hb_000599_360 0.0901187039 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_000683_050 0.0914540573 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
14 Hb_010407_030 0.0919402632 - - PREDICTED: casein kinase I-like [Jatropha curcas]
15 Hb_001811_170 0.0923331834 - - dynamin, putative [Ricinus communis]
16 Hb_004030_060 0.0926129993 - - receptor protein kinase zmpk1, putative [Ricinus communis]
17 Hb_000109_260 0.0926260591 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
18 Hb_000984_140 0.0950093894 - - PREDICTED: xylulose kinase [Jatropha curcas]
19 Hb_005694_060 0.0951911844 - - PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase [Jatropha curcas]
20 Hb_000007_410 0.0956349316 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_005854_040 Hb_005854_040 Hb_000027_200 Hb_000027_200 Hb_005854_040--Hb_000027_200 Hb_007317_020 Hb_007317_020 Hb_005854_040--Hb_007317_020 Hb_002687_200 Hb_002687_200 Hb_005854_040--Hb_002687_200 Hb_021977_010 Hb_021977_010 Hb_005854_040--Hb_021977_010 Hb_001226_130 Hb_001226_130 Hb_005854_040--Hb_001226_130 Hb_015884_020 Hb_015884_020 Hb_005854_040--Hb_015884_020 Hb_000027_200--Hb_002687_200 Hb_000027_200--Hb_015884_020 Hb_000027_200--Hb_021977_010 Hb_001159_060 Hb_001159_060 Hb_000027_200--Hb_001159_060 Hb_000976_110 Hb_000976_110 Hb_000027_200--Hb_000976_110 Hb_000254_070 Hb_000254_070 Hb_007317_020--Hb_000254_070 Hb_000157_140 Hb_000157_140 Hb_007317_020--Hb_000157_140 Hb_098533_010 Hb_098533_010 Hb_007317_020--Hb_098533_010 Hb_010381_020 Hb_010381_020 Hb_007317_020--Hb_010381_020 Hb_001473_170 Hb_001473_170 Hb_007317_020--Hb_001473_170 Hb_003680_220 Hb_003680_220 Hb_002687_200--Hb_003680_220 Hb_002687_200--Hb_015884_020 Hb_000007_090 Hb_000007_090 Hb_002687_200--Hb_000007_090 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_002942_230 Hb_002942_230 Hb_002687_200--Hb_002942_230 Hb_001414_010 Hb_001414_010 Hb_021977_010--Hb_001414_010 Hb_003661_010 Hb_003661_010 Hb_021977_010--Hb_003661_010 Hb_000599_360 Hb_000599_360 Hb_021977_010--Hb_000599_360 Hb_009476_120 Hb_009476_120 Hb_021977_010--Hb_009476_120 Hb_001998_220 Hb_001998_220 Hb_021977_010--Hb_001998_220 Hb_158845_060 Hb_158845_060 Hb_021977_010--Hb_158845_060 Hb_001587_030 Hb_001587_030 Hb_001226_130--Hb_001587_030 Hb_000649_060 Hb_000649_060 Hb_001226_130--Hb_000649_060 Hb_001811_170 Hb_001811_170 Hb_001226_130--Hb_001811_170 Hb_000342_050 Hb_000342_050 Hb_001226_130--Hb_000342_050 Hb_004837_280 Hb_004837_280 Hb_001226_130--Hb_004837_280 Hb_000152_700 Hb_000152_700 Hb_001226_130--Hb_000152_700 Hb_005694_060 Hb_005694_060 Hb_015884_020--Hb_005694_060 Hb_001117_110 Hb_001117_110 Hb_015884_020--Hb_001117_110 Hb_019654_020 Hb_019654_020 Hb_015884_020--Hb_019654_020 Hb_006970_020 Hb_006970_020 Hb_015884_020--Hb_006970_020 Hb_000979_130 Hb_000979_130 Hb_015884_020--Hb_000979_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.19737 7.34515 9.90936 12.6394 3.05257 3.38665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.49129 2.487 2.78506 12.2283 12.5431

CAGE analysis