Hb_005862_010

Information

Type -
Description -
Location Contig5862: 692-3678
Sequence    

Annotation

kegg
ID pxb:103965507
description riboflavin biosynthesis protein PYRD, chloroplastic-like
nr
ID XP_012083408.1
description PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
swissprot
ID Q8GWP5
description Riboflavin biosynthesis protein PYRD, chloroplastic OS=Arabidopsis thaliana GN=PYRD PE=1 SV=1
trembl
ID A0A067KA00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005862_010 0.0 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
2 Hb_004934_070 0.0788678574 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
3 Hb_000494_040 0.0788683701 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
4 Hb_144598_030 0.0825820269 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
5 Hb_004072_020 0.0852804424 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
6 Hb_003912_090 0.0881200229 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
7 Hb_137403_010 0.0948972355 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
8 Hb_143398_010 0.0950500983 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
9 Hb_001135_060 0.0960354642 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
10 Hb_020665_040 0.0967426195 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
11 Hb_002271_020 0.1010123463 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
12 Hb_009117_030 0.1011843755 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
13 Hb_010381_120 0.1021359189 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
14 Hb_002374_020 0.103011763 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
15 Hb_002107_160 0.1048094499 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
16 Hb_000107_200 0.1061531665 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
17 Hb_002616_050 0.1063426305 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
18 Hb_028420_020 0.1089007126 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
19 Hb_010691_060 0.108906731 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
20 Hb_010180_010 0.1090459096 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]

Gene co-expression network

sample Hb_005862_010 Hb_005862_010 Hb_004934_070 Hb_004934_070 Hb_005862_010--Hb_004934_070 Hb_000494_040 Hb_000494_040 Hb_005862_010--Hb_000494_040 Hb_144598_030 Hb_144598_030 Hb_005862_010--Hb_144598_030 Hb_004072_020 Hb_004072_020 Hb_005862_010--Hb_004072_020 Hb_003912_090 Hb_003912_090 Hb_005862_010--Hb_003912_090 Hb_137403_010 Hb_137403_010 Hb_005862_010--Hb_137403_010 Hb_000785_080 Hb_000785_080 Hb_004934_070--Hb_000785_080 Hb_002374_020 Hb_002374_020 Hb_004934_070--Hb_002374_020 Hb_003641_060 Hb_003641_060 Hb_004934_070--Hb_003641_060 Hb_004881_020 Hb_004881_020 Hb_004934_070--Hb_004881_020 Hb_004934_070--Hb_144598_030 Hb_000606_090 Hb_000606_090 Hb_000494_040--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000494_040--Hb_001135_060 Hb_000373_240 Hb_000373_240 Hb_000494_040--Hb_000373_240 Hb_163950_030 Hb_163950_030 Hb_000494_040--Hb_163950_030 Hb_000010_090 Hb_000010_090 Hb_000494_040--Hb_000010_090 Hb_020665_040 Hb_020665_040 Hb_144598_030--Hb_020665_040 Hb_007594_130 Hb_007594_130 Hb_144598_030--Hb_007594_130 Hb_002671_100 Hb_002671_100 Hb_144598_030--Hb_002671_100 Hb_004117_130 Hb_004117_130 Hb_144598_030--Hb_004117_130 Hb_144598_030--Hb_004881_020 Hb_002716_130 Hb_002716_130 Hb_144598_030--Hb_002716_130 Hb_002616_050 Hb_002616_050 Hb_004072_020--Hb_002616_050 Hb_024714_100 Hb_024714_100 Hb_004072_020--Hb_024714_100 Hb_001998_230 Hb_001998_230 Hb_004072_020--Hb_001998_230 Hb_000363_500 Hb_000363_500 Hb_004072_020--Hb_000363_500 Hb_002112_040 Hb_002112_040 Hb_004072_020--Hb_002112_040 Hb_028420_020 Hb_028420_020 Hb_003912_090--Hb_028420_020 Hb_003912_090--Hb_144598_030 Hb_005016_050 Hb_005016_050 Hb_003912_090--Hb_005016_050 Hb_003912_090--Hb_020665_040 Hb_003912_090--Hb_002374_020 Hb_003656_140 Hb_003656_140 Hb_137403_010--Hb_003656_140 Hb_002023_020 Hb_002023_020 Hb_137403_010--Hb_002023_020 Hb_002982_040 Hb_002982_040 Hb_137403_010--Hb_002982_040 Hb_000364_150 Hb_000364_150 Hb_137403_010--Hb_000364_150 Hb_150360_010 Hb_150360_010 Hb_137403_010--Hb_150360_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.895712 0.448589 0.695776 0.960609 0.890514 2.62561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53121 1.02384 0.786155 0.662879 0.624851

CAGE analysis