Hb_005867_070

Information

Type -
Description -
Location Contig5867: 52427-58366
Sequence    

Annotation

kegg
ID rcu:RCOM_1039610
description DNA binding protein, putative
nr
ID XP_002514048.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJX9
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1039610 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50001: 52422-58627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005867_070 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_003861_050 0.0451179467 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
3 Hb_004837_180 0.0452505324 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
4 Hb_005730_040 0.0515346819 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
5 Hb_007590_020 0.0539576411 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
6 Hb_000165_040 0.0556675108 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
7 Hb_000339_040 0.0559340653 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
8 Hb_000976_140 0.0559792498 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
9 Hb_001226_150 0.0564489344 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
10 Hb_002986_100 0.0565376534 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
11 Hb_183510_020 0.0577318751 - - coated vesicle membrane protein, putative [Ricinus communis]
12 Hb_001720_040 0.0588576694 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001456_060 0.0595578357 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
14 Hb_004994_010 0.0607600067 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
15 Hb_015807_050 0.0621537468 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
16 Hb_003428_010 0.0622834459 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
17 Hb_002205_250 0.0633077626 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
18 Hb_001408_140 0.0633738344 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
19 Hb_001153_210 0.0634544409 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
20 Hb_000696_230 0.0634699932 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]

Gene co-expression network

sample Hb_005867_070 Hb_005867_070 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_004837_180 Hb_004837_180 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040 Hb_004994_010 Hb_004994_010 Hb_003861_050--Hb_004994_010 Hb_002889_010 Hb_002889_010 Hb_003861_050--Hb_002889_010 Hb_001377_310 Hb_001377_310 Hb_003861_050--Hb_001377_310 Hb_002805_190 Hb_002805_190 Hb_003861_050--Hb_002805_190 Hb_015807_050 Hb_015807_050 Hb_003861_050--Hb_015807_050 Hb_004837_180--Hb_007590_020 Hb_003929_280 Hb_003929_280 Hb_004837_180--Hb_003929_280 Hb_001225_040 Hb_001225_040 Hb_004837_180--Hb_001225_040 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004236_050 Hb_004236_050 Hb_004837_180--Hb_004236_050 Hb_000976_140 Hb_000976_140 Hb_005730_040--Hb_000976_140 Hb_002849_130 Hb_002849_130 Hb_005730_040--Hb_002849_130 Hb_000708_030 Hb_000708_030 Hb_005730_040--Hb_000708_030 Hb_000170_090 Hb_000170_090 Hb_005730_040--Hb_000170_090 Hb_005730_040--Hb_001225_040 Hb_001089_030 Hb_001089_030 Hb_007590_020--Hb_001089_030 Hb_007590_020--Hb_004236_050 Hb_007590_020--Hb_005730_040 Hb_007590_020--Hb_001225_040 Hb_000441_120 Hb_000441_120 Hb_000165_040--Hb_000441_120 Hb_000006_040 Hb_000006_040 Hb_000165_040--Hb_000006_040 Hb_000935_010 Hb_000935_010 Hb_000165_040--Hb_000935_010 Hb_000174_170 Hb_000174_170 Hb_000165_040--Hb_000174_170 Hb_001021_150 Hb_001021_150 Hb_000165_040--Hb_001021_150 Hb_004052_080 Hb_004052_080 Hb_000339_040--Hb_004052_080 Hb_001456_060 Hb_001456_060 Hb_000339_040--Hb_001456_060 Hb_002876_230 Hb_002876_230 Hb_000339_040--Hb_002876_230 Hb_009911_030 Hb_009911_030 Hb_000339_040--Hb_009911_030 Hb_000339_040--Hb_004837_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.81162 6.01616 6.39019 4.67006 5.59462 5.6816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.77581 5.2759 4.13176 5.6132 5.9251

CAGE analysis