Hb_005883_010

Information

Type -
Description -
Location Contig5883: 5314-13688
Sequence    

Annotation

kegg
ID rcu:RCOM_1512850
description hypothetical protein
nr
ID XP_002511476.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R901
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1512850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50025: 5328-11118 , PASA_asmbl_50026: 11122-11688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005883_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007943_120 0.0546342981 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
3 Hb_005188_060 0.0551802009 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
4 Hb_000283_130 0.0651311893 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
5 Hb_010738_010 0.0652110058 - - PREDICTED: B2 protein [Jatropha curcas]
6 Hb_000140_330 0.0668166041 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
7 Hb_007229_040 0.0698241924 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
8 Hb_004635_050 0.0698418203 - - nucleolar phosphoprotein, putative [Ricinus communis]
9 Hb_000406_240 0.0736795853 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
10 Hb_000227_250 0.0807042367 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
11 Hb_001616_050 0.0814593925 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
12 Hb_003680_230 0.0817268636 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
13 Hb_017075_030 0.083696927 - - helicase, putative [Ricinus communis]
14 Hb_000300_360 0.0839398984 - - PREDICTED: exosome component 10 [Jatropha curcas]
15 Hb_007982_070 0.0843822669 - - PREDICTED: protein CPR-5 [Jatropha curcas]
16 Hb_080147_040 0.0848702051 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
17 Hb_032202_110 0.0850490697 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_001771_120 0.0870032939 - - K+ transport growth defect-like protein [Hevea brasiliensis]
19 Hb_008554_120 0.0883838797 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
20 Hb_001083_050 0.0888448726 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]

Gene co-expression network

sample Hb_005883_010 Hb_005883_010 Hb_007943_120 Hb_007943_120 Hb_005883_010--Hb_007943_120 Hb_005188_060 Hb_005188_060 Hb_005883_010--Hb_005188_060 Hb_000283_130 Hb_000283_130 Hb_005883_010--Hb_000283_130 Hb_010738_010 Hb_010738_010 Hb_005883_010--Hb_010738_010 Hb_000140_330 Hb_000140_330 Hb_005883_010--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005883_010--Hb_007229_040 Hb_007943_120--Hb_005188_060 Hb_028872_120 Hb_028872_120 Hb_007943_120--Hb_028872_120 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_004635_050 Hb_004635_050 Hb_007943_120--Hb_004635_050 Hb_003680_230 Hb_003680_230 Hb_007943_120--Hb_003680_230 Hb_005188_060--Hb_003680_230 Hb_005188_060--Hb_000140_330 Hb_005188_060--Hb_007229_040 Hb_005188_060--Hb_004635_050 Hb_000283_130--Hb_010738_010 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_017075_030 Hb_017075_030 Hb_000283_130--Hb_017075_030 Hb_000457_050 Hb_000457_050 Hb_000283_130--Hb_000457_050 Hb_000283_130--Hb_004635_050 Hb_032202_110 Hb_032202_110 Hb_010738_010--Hb_032202_110 Hb_000169_130 Hb_000169_130 Hb_010738_010--Hb_000169_130 Hb_111198_010 Hb_111198_010 Hb_010738_010--Hb_111198_010 Hb_000103_100 Hb_000103_100 Hb_010738_010--Hb_000103_100 Hb_000140_330--Hb_007943_120 Hb_000140_330--Hb_000406_240 Hb_006452_160 Hb_006452_160 Hb_000140_330--Hb_006452_160 Hb_000368_020 Hb_000368_020 Hb_000140_330--Hb_000368_020 Hb_140049_020 Hb_140049_020 Hb_007229_040--Hb_140049_020 Hb_001117_190 Hb_001117_190 Hb_007229_040--Hb_001117_190 Hb_000320_380 Hb_000320_380 Hb_007229_040--Hb_000320_380 Hb_007229_040--Hb_007943_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.3536 32.7895 24.3261 9.74426 31.0162 30.3982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0717 10.6115 14.6923 11.1372 9.76255

CAGE analysis