Hb_005883_030

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig5883: 26909-29219
Sequence    

Annotation

kegg
ID rcu:RCOM_1512870
description DNA binding protein, putative
nr
ID XP_012080161.1
description PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
swissprot
ID Q2V9B0
description Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067KH70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11545 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb1r1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50029: 26843-29110
cDNA
(Sanger)
(ID:Location)		 002_E14.ab1: 26849-28469 , 020_F23.ab1: 26843-28456 , 037_J08.ab1: 26843-28475 , 053_H07.ab1: 26843-28439

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005883_030 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
2 Hb_000030_010 0.0906371564 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
3 Hb_005062_070 0.0920067292 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
4 Hb_004751_020 0.0965175646 - - PREDICTED: uncharacterized protein LOC105648266 [Jatropha curcas]
5 Hb_000000_080 0.0977888717 - - lipoate-protein ligase B, putative [Ricinus communis]
6 Hb_000015_080 0.0989168134 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
7 Hb_010795_010 0.101799463 - - protein with unknown function [Ricinus communis]
8 Hb_004657_050 0.1022045931 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
9 Hb_003025_090 0.1048960369 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
10 Hb_000139_410 0.1081190372 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
11 Hb_004109_200 0.109306475 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
12 Hb_002253_070 0.1093857028 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
13 Hb_001862_190 0.1094311922 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
14 Hb_001913_010 0.1095276235 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
15 Hb_006198_110 0.1097865462 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
16 Hb_012340_030 0.1099335611 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
17 Hb_002043_180 0.1099421753 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
18 Hb_001635_100 0.1105572859 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
19 Hb_010661_030 0.1108551322 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
20 Hb_002272_250 0.1111011356 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005883_030 Hb_005883_030 Hb_000030_010 Hb_000030_010 Hb_005883_030--Hb_000030_010 Hb_005062_070 Hb_005062_070 Hb_005883_030--Hb_005062_070 Hb_004751_020 Hb_004751_020 Hb_005883_030--Hb_004751_020 Hb_000000_080 Hb_000000_080 Hb_005883_030--Hb_000000_080 Hb_000015_080 Hb_000015_080 Hb_005883_030--Hb_000015_080 Hb_010795_010 Hb_010795_010 Hb_005883_030--Hb_010795_010 Hb_000120_950 Hb_000120_950 Hb_000030_010--Hb_000120_950 Hb_000030_010--Hb_005062_070 Hb_003609_040 Hb_003609_040 Hb_000030_010--Hb_003609_040 Hb_007547_010 Hb_007547_010 Hb_000030_010--Hb_007547_010 Hb_001623_420 Hb_001623_420 Hb_000030_010--Hb_001623_420 Hb_000392_300 Hb_000392_300 Hb_000030_010--Hb_000392_300 Hb_001454_210 Hb_001454_210 Hb_005062_070--Hb_001454_210 Hb_001030_120 Hb_001030_120 Hb_005062_070--Hb_001030_120 Hb_004046_010 Hb_004046_010 Hb_005062_070--Hb_004046_010 Hb_000190_140 Hb_000190_140 Hb_005062_070--Hb_000190_140 Hb_009111_050 Hb_009111_050 Hb_005062_070--Hb_009111_050 Hb_006198_110 Hb_006198_110 Hb_004751_020--Hb_006198_110 Hb_000866_270 Hb_000866_270 Hb_004751_020--Hb_000866_270 Hb_010661_030 Hb_010661_030 Hb_004751_020--Hb_010661_030 Hb_004657_050 Hb_004657_050 Hb_004751_020--Hb_004657_050 Hb_002232_440 Hb_002232_440 Hb_004751_020--Hb_002232_440 Hb_002928_130 Hb_002928_130 Hb_004751_020--Hb_002928_130 Hb_006065_020 Hb_006065_020 Hb_000000_080--Hb_006065_020 Hb_001439_150 Hb_001439_150 Hb_000000_080--Hb_001439_150 Hb_168707_030 Hb_168707_030 Hb_000000_080--Hb_168707_030 Hb_000000_080--Hb_000030_010 Hb_000017_120 Hb_000017_120 Hb_000000_080--Hb_000017_120 Hb_007951_060 Hb_007951_060 Hb_000000_080--Hb_007951_060 Hb_000015_080--Hb_002928_130 Hb_011360_140 Hb_011360_140 Hb_000015_080--Hb_011360_140 Hb_003540_040 Hb_003540_040 Hb_000015_080--Hb_003540_040 Hb_000392_440 Hb_000392_440 Hb_000015_080--Hb_000392_440 Hb_005993_040 Hb_005993_040 Hb_000015_080--Hb_005993_040 Hb_000392_270 Hb_000392_270 Hb_000015_080--Hb_000392_270 Hb_002518_140 Hb_002518_140 Hb_010795_010--Hb_002518_140 Hb_010795_010--Hb_000030_010 Hb_171900_080 Hb_171900_080 Hb_010795_010--Hb_171900_080 Hb_000123_120 Hb_000123_120 Hb_010795_010--Hb_000123_120 Hb_010795_010--Hb_000392_300 Hb_019654_100 Hb_019654_100 Hb_010795_010--Hb_019654_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
361.472 123.925 93.0871 29.159 206.593 215.5
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
241.942 249.83 242.651 73.8866 94.1761

CAGE analysis