Hb_005883_050

Information

Type -
Description -
Location Contig5883: 42885-59042
Sequence    

Annotation

kegg
ID rcu:RCOM_1512900
description transportin, putative
nr
ID XP_012080163.1
description PREDICTED: transportin-3 [Jatropha curcas]
swissprot
ID Q6P2B1
description Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1
trembl
ID A0A067K4W6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11548 PE=4 SV=1
Gene Ontology
ID GO:0005622
description arm repeat superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50035: 42915-45204 , PASA_asmbl_50036: 45225-45600 , PASA_asmbl_50037: 45612-48558 , PASA_asmbl_50038: 48978-52226 , PASA_asmbl_50039: 53660-58970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005883_050 0.0 - - PREDICTED: transportin-3 [Jatropha curcas]
2 Hb_071736_010 0.0537725337 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
3 Hb_000120_500 0.0640007489 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
4 Hb_003434_060 0.0653549487 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
5 Hb_000390_060 0.0701661735 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
6 Hb_005754_060 0.0719472763 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004447_060 0.0759760619 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
8 Hb_004204_020 0.08266197 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
9 Hb_039837_010 0.0834774304 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
10 Hb_000179_020 0.0837086769 - - amidase, putative [Ricinus communis]
11 Hb_000956_030 0.0843826612 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
12 Hb_002174_060 0.0849294206 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
13 Hb_000048_140 0.0851796772 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
14 Hb_000134_090 0.0852830349 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
15 Hb_004724_200 0.0853092384 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
16 Hb_033642_010 0.0858393014 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
17 Hb_000034_050 0.0860225221 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
18 Hb_002811_360 0.0868209181 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
19 Hb_004198_010 0.0869512991 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
20 Hb_006332_010 0.0878305243 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_005883_050 Hb_005883_050 Hb_071736_010 Hb_071736_010 Hb_005883_050--Hb_071736_010 Hb_000120_500 Hb_000120_500 Hb_005883_050--Hb_000120_500 Hb_003434_060 Hb_003434_060 Hb_005883_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_005883_050--Hb_000390_060 Hb_005754_060 Hb_005754_060 Hb_005883_050--Hb_005754_060 Hb_004447_060 Hb_004447_060 Hb_005883_050--Hb_004447_060 Hb_071736_010--Hb_005754_060 Hb_000023_140 Hb_000023_140 Hb_071736_010--Hb_000023_140 Hb_001266_080 Hb_001266_080 Hb_071736_010--Hb_001266_080 Hb_002616_050 Hb_002616_050 Hb_071736_010--Hb_002616_050 Hb_001855_010 Hb_001855_010 Hb_071736_010--Hb_001855_010 Hb_000956_030 Hb_000956_030 Hb_000120_500--Hb_000956_030 Hb_000120_500--Hb_003434_060 Hb_000120_500--Hb_000390_060 Hb_028639_060 Hb_028639_060 Hb_000120_500--Hb_028639_060 Hb_004198_010 Hb_004198_010 Hb_000120_500--Hb_004198_010 Hb_003434_060--Hb_000390_060 Hb_003434_060--Hb_000956_030 Hb_003434_060--Hb_004198_010 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030 Hb_000230_330 Hb_000230_330 Hb_000390_060--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000390_060--Hb_001584_110 Hb_000034_050 Hb_000034_050 Hb_000390_060--Hb_000034_050 Hb_000390_060--Hb_000316_030 Hb_009048_040 Hb_009048_040 Hb_005754_060--Hb_009048_040 Hb_000395_170 Hb_000395_170 Hb_005754_060--Hb_000395_170 Hb_005754_060--Hb_000023_140 Hb_001454_210 Hb_001454_210 Hb_005754_060--Hb_001454_210 Hb_001301_200 Hb_001301_200 Hb_004447_060--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_004447_060--Hb_001797_050 Hb_004619_050 Hb_004619_050 Hb_004447_060--Hb_004619_050 Hb_048937_040 Hb_048937_040 Hb_004447_060--Hb_048937_040 Hb_007163_090 Hb_007163_090 Hb_004447_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004447_060--Hb_000820_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2836 7.41574 6.5008 10.0771 20.4249 39.1617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6988 13.6088 18.82 11.1526 8.17538

CAGE analysis