Hb_005883_100

Information

Type -
Description -
Location Contig5883: 84795-87434
Sequence    

Annotation

kegg
ID rcu:RCOM_1512940
description 5-formyltetrahydrofolate cyclo-ligase, putative (EC:6.3.3.2)
nr
ID XP_002511485.1
description 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
swissprot
ID Q8L539
description 5-formyltetrahydrofolate cyclo-ligase, mitochondrial OS=Arabidopsis thaliana GN=5FCL PE=1 SV=1
trembl
ID B9R910
description 5-formyltetrahydrofolate cyclo-ligase OS=Ricinus communis GN=RCOM_1512940 PE=3 SV=1
Gene Ontology
ID GO:0005524
description 5-formyltetrahydrofolate cyclo- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50046: 84847-87536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005883_100 0.0 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
2 Hb_005568_120 0.0766250452 - - Prephenate dehydratase [Hevea brasiliensis]
3 Hb_012675_060 0.0781331369 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
4 Hb_000817_030 0.0783588122 - - mak, putative [Ricinus communis]
5 Hb_001998_050 0.0784550554 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
6 Hb_001085_120 0.0789805352 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
7 Hb_004567_120 0.0798611396 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
8 Hb_002925_030 0.0816150357 - - 40S ribosomal protein S16B [Hevea brasiliensis]
9 Hb_002374_390 0.0821397628 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
10 Hb_001279_360 0.0824005032 - - protein with unknown function [Ricinus communis]
11 Hb_000175_060 0.0827530142 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
12 Hb_032260_030 0.0831639678 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
13 Hb_148200_010 0.0841272121 - - hypothetical protein 33 [Hevea brasiliensis]
14 Hb_001016_090 0.0854284803 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
15 Hb_011644_030 0.0855660325 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
16 Hb_012753_160 0.0859078649 - - ara4-interacting protein, putative [Ricinus communis]
17 Hb_001143_080 0.0867500641 - - PREDICTED: F-box protein 7 [Jatropha curcas]
18 Hb_000363_480 0.0872061751 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
19 Hb_004586_320 0.0874450452 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
20 Hb_017948_010 0.0876670599 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_005883_100 Hb_005883_100 Hb_005568_120 Hb_005568_120 Hb_005883_100--Hb_005568_120 Hb_012675_060 Hb_012675_060 Hb_005883_100--Hb_012675_060 Hb_000817_030 Hb_000817_030 Hb_005883_100--Hb_000817_030 Hb_001998_050 Hb_001998_050 Hb_005883_100--Hb_001998_050 Hb_001085_120 Hb_001085_120 Hb_005883_100--Hb_001085_120 Hb_004567_120 Hb_004567_120 Hb_005883_100--Hb_004567_120 Hb_028515_010 Hb_028515_010 Hb_005568_120--Hb_028515_010 Hb_002676_090 Hb_002676_090 Hb_005568_120--Hb_002676_090 Hb_011173_050 Hb_011173_050 Hb_005568_120--Hb_011173_050 Hb_005568_120--Hb_004567_120 Hb_012114_040 Hb_012114_040 Hb_005568_120--Hb_012114_040 Hb_000373_130 Hb_000373_130 Hb_005568_120--Hb_000373_130 Hb_012753_160 Hb_012753_160 Hb_012675_060--Hb_012753_160 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_000834_270 Hb_000834_270 Hb_012675_060--Hb_000834_270 Hb_004586_320 Hb_004586_320 Hb_012675_060--Hb_004586_320 Hb_000574_480 Hb_000574_480 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220 Hb_027625_010 Hb_027625_010 Hb_000817_030--Hb_027625_010 Hb_002742_090 Hb_002742_090 Hb_000817_030--Hb_002742_090 Hb_005463_140 Hb_005463_140 Hb_000817_030--Hb_005463_140 Hb_001519_030 Hb_001519_030 Hb_000817_030--Hb_001519_030 Hb_017948_010 Hb_017948_010 Hb_000817_030--Hb_017948_010 Hb_000227_230 Hb_000227_230 Hb_001998_050--Hb_000227_230 Hb_001998_050--Hb_000574_480 Hb_002925_030 Hb_002925_030 Hb_001998_050--Hb_002925_030 Hb_001998_050--Hb_012753_160 Hb_001998_050--Hb_004586_320 Hb_001998_050--Hb_012675_060 Hb_000453_120 Hb_000453_120 Hb_001085_120--Hb_000453_120 Hb_000103_010 Hb_000103_010 Hb_001085_120--Hb_000103_010 Hb_001484_070 Hb_001484_070 Hb_001085_120--Hb_001484_070 Hb_001512_080 Hb_001512_080 Hb_001085_120--Hb_001512_080 Hb_001776_160 Hb_001776_160 Hb_001085_120--Hb_001776_160 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360 Hb_004216_050 Hb_004216_050 Hb_004567_120--Hb_004216_050 Hb_006478_150 Hb_006478_150 Hb_004567_120--Hb_006478_150 Hb_004567_120--Hb_002676_090 Hb_011644_030 Hb_011644_030 Hb_004567_120--Hb_011644_030 Hb_000136_170 Hb_000136_170 Hb_004567_120--Hb_000136_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4852 8.54631 7.99843 18.3191 17.6263 20.2528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9663 67.9359 45.7598 26.3964 11.0922

CAGE analysis