Hb_005888_020

Information

Type -
Description -
Location Contig5888: 17994-19777
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07680g
description POPTRDRAFT_551392; hypothetical protein
nr
ID XP_011027425.1
description PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PBA8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s07680g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005888_020 0.0 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
2 Hb_001170_020 0.0162102321 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000297_190 0.0167221772 - - cell wall invertase [Manihot esculenta]
4 Hb_002304_030 0.0173276677 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
5 Hb_010288_070 0.0271335116 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]
6 Hb_003050_380 0.0279019552 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
7 Hb_005610_070 0.041772882 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_003032_080 0.0461341644 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005754_050 0.0480890739 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
10 Hb_074312_010 0.0501871033 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
11 Hb_005280_020 0.050516086 - - glycine cleavage system h protein, putative [Ricinus communis]
12 Hb_000977_250 0.0522290701 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_000053_010 0.0552080914 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
14 Hb_003605_170 0.0556560041 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
15 Hb_002434_040 0.0564918684 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
16 Hb_003836_040 0.0565476635 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]
17 Hb_023313_050 0.0572016944 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
18 Hb_000210_020 0.0594932331 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
19 Hb_000834_160 0.0603946577 - - hypothetical protein JCGZ_07239 [Jatropha curcas]
20 Hb_004464_040 0.0632057599 - - hypothetical protein JCGZ_01308 [Jatropha curcas]

Gene co-expression network

sample Hb_005888_020 Hb_005888_020 Hb_001170_020 Hb_001170_020 Hb_005888_020--Hb_001170_020 Hb_000297_190 Hb_000297_190 Hb_005888_020--Hb_000297_190 Hb_002304_030 Hb_002304_030 Hb_005888_020--Hb_002304_030 Hb_010288_070 Hb_010288_070 Hb_005888_020--Hb_010288_070 Hb_003050_380 Hb_003050_380 Hb_005888_020--Hb_003050_380 Hb_005610_070 Hb_005610_070 Hb_005888_020--Hb_005610_070 Hb_001170_020--Hb_003050_380 Hb_001170_020--Hb_000297_190 Hb_001170_020--Hb_002304_030 Hb_001170_020--Hb_010288_070 Hb_000977_250 Hb_000977_250 Hb_001170_020--Hb_000977_250 Hb_000297_190--Hb_002304_030 Hb_000297_190--Hb_010288_070 Hb_003836_040 Hb_003836_040 Hb_000297_190--Hb_003836_040 Hb_000297_190--Hb_003050_380 Hb_002304_030--Hb_010288_070 Hb_002304_030--Hb_005610_070 Hb_002304_030--Hb_003050_380 Hb_003032_080 Hb_003032_080 Hb_010288_070--Hb_003032_080 Hb_010288_070--Hb_005610_070 Hb_074312_010 Hb_074312_010 Hb_010288_070--Hb_074312_010 Hb_010288_070--Hb_003050_380 Hb_003050_380--Hb_003032_080 Hb_005610_070--Hb_074312_010 Hb_011382_010 Hb_011382_010 Hb_005610_070--Hb_011382_010 Hb_002014_150 Hb_002014_150 Hb_005610_070--Hb_002014_150 Hb_163566_020 Hb_163566_020 Hb_005610_070--Hb_163566_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0885846 0.0235121 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.102591

CAGE analysis