Hb_005892_040

Information

Type -
Description -
Location Contig5892: 46332-51240
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07870g
description POPTRDRAFT_565798; proton-dependent oligopeptide transport family protein
nr
ID KDP40370.1
description hypothetical protein JCGZ_02368 [Jatropha curcas]
swissprot
ID Q9FNL7
description Protein NRT1/ PTR FAMILY 5.2 OS=Arabidopsis thaliana GN=NPF5.2 PE=2 SV=1
trembl
ID A0A067L788
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02368 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50126: 45635-51390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005892_040 0.0 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
2 Hb_003506_010 0.0536650246 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
3 Hb_004162_320 0.057314559 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
4 Hb_026240_020 0.0734282149 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
5 Hb_001405_040 0.0831016232 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
6 Hb_020805_070 0.0838565942 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
7 Hb_000977_030 0.0880251507 - - unnamed protein product [Vitis vinifera]
8 Hb_000162_200 0.0882467524 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
9 Hb_001104_020 0.0896831248 - - DNA binding protein, putative [Ricinus communis]
10 Hb_000008_150 0.0907527102 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
11 Hb_029639_030 0.0908970616 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
12 Hb_002078_320 0.0919295465 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
13 Hb_001488_420 0.0971494762 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
14 Hb_033772_060 0.1000342561 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003092_020 0.10010021 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
16 Hb_093218_010 0.1003379225 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
17 Hb_004855_080 0.1031697394 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
18 Hb_000732_220 0.1088723029 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
19 Hb_015001_030 0.1102919153 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
20 Hb_001135_010 0.1159667922 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]

Gene co-expression network

sample Hb_005892_040 Hb_005892_040 Hb_003506_010 Hb_003506_010 Hb_005892_040--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_005892_040--Hb_004162_320 Hb_026240_020 Hb_026240_020 Hb_005892_040--Hb_026240_020 Hb_001405_040 Hb_001405_040 Hb_005892_040--Hb_001405_040 Hb_020805_070 Hb_020805_070 Hb_005892_040--Hb_020805_070 Hb_000977_030 Hb_000977_030 Hb_005892_040--Hb_000977_030 Hb_003506_010--Hb_004162_320 Hb_002078_320 Hb_002078_320 Hb_003506_010--Hb_002078_320 Hb_003506_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_003506_010--Hb_004855_080 Hb_000162_200 Hb_000162_200 Hb_003506_010--Hb_000162_200 Hb_004162_320--Hb_020805_070 Hb_004162_320--Hb_002078_320 Hb_004162_320--Hb_000162_200 Hb_004162_320--Hb_001405_040 Hb_026240_020--Hb_000977_030 Hb_003092_020 Hb_003092_020 Hb_026240_020--Hb_003092_020 Hb_003454_050 Hb_003454_050 Hb_026240_020--Hb_003454_050 Hb_005730_110 Hb_005730_110 Hb_026240_020--Hb_005730_110 Hb_026240_020--Hb_003506_010 Hb_001405_040--Hb_020805_070 Hb_001405_040--Hb_004855_080 Hb_000008_150 Hb_000008_150 Hb_001405_040--Hb_000008_150 Hb_004116_050 Hb_004116_050 Hb_001405_040--Hb_004116_050 Hb_001405_040--Hb_003506_010 Hb_020805_070--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_020805_070--Hb_000901_010 Hb_000290_030 Hb_000290_030 Hb_000977_030--Hb_000290_030 Hb_003580_050 Hb_003580_050 Hb_000977_030--Hb_003580_050 Hb_000977_030--Hb_000162_200 Hb_002724_010 Hb_002724_010 Hb_000977_030--Hb_002724_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.48107 9.9765 9.5312 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0223096 0 4.62557 7.77369

CAGE analysis