Hb_005892_060

Information

Type -
Description -
Location Contig5892: 65666-75026
Sequence    

Annotation

kegg
ID pop:POPTR_0008s17020g
description POPTRDRAFT_803768; cyclopropane-fatty-acyl-phospholipid synthase family protein
nr
ID XP_012069890.1
description PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
swissprot
ID O53732
description Tuberculostearic acid methyltransferase UfaA1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=ufaA1 PE=1 SV=3
trembl
ID A0A067KZG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02371 PE=4 SV=1
Gene Ontology
ID GO:0008825
description cyclopropane-fatty-acyl-phospholipid synthase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50131: 65706-69112 , PASA_asmbl_50132: 69133-74935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005892_060 0.0 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
2 Hb_000699_110 0.1598561969 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
3 Hb_002226_030 0.1630814302 - - PREDICTED: high affinity nitrate transporter 2.7 [Jatropha curcas]
4 Hb_002900_140 0.167052944 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
5 Hb_002301_290 0.1732072055 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
6 Hb_074197_010 0.1737247449 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
7 Hb_000997_270 0.1766810225 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
8 Hb_027380_040 0.1808244366 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
9 Hb_002471_100 0.1823406598 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
10 Hb_002054_010 0.1836996808 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
11 Hb_000331_440 0.1837360962 - - hypothetical protein POPTR_0015s10290g [Populus trichocarpa]
12 Hb_002603_130 0.1840116441 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
13 Hb_000139_330 0.1977441814 - - short chain dehydrogenase, putative [Ricinus communis]
14 Hb_005271_170 0.1980668703 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
15 Hb_005739_010 0.1998278279 - - hypothetical protein JCGZ_04016 [Jatropha curcas]
16 Hb_000065_070 0.2010050421 - - hypothetical protein CISIN_1g039077mg [Citrus sinensis]
17 Hb_000630_040 0.2039697876 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
18 Hb_029921_010 0.2074331332 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
19 Hb_000705_300 0.2075902718 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
20 Hb_000261_510 0.2081651322 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Populus euphratica]

Gene co-expression network

sample Hb_005892_060 Hb_005892_060 Hb_000699_110 Hb_000699_110 Hb_005892_060--Hb_000699_110 Hb_002226_030 Hb_002226_030 Hb_005892_060--Hb_002226_030 Hb_002900_140 Hb_002900_140 Hb_005892_060--Hb_002900_140 Hb_002301_290 Hb_002301_290 Hb_005892_060--Hb_002301_290 Hb_074197_010 Hb_074197_010 Hb_005892_060--Hb_074197_010 Hb_000997_270 Hb_000997_270 Hb_005892_060--Hb_000997_270 Hb_025246_010 Hb_025246_010 Hb_000699_110--Hb_025246_010 Hb_001623_240 Hb_001623_240 Hb_000699_110--Hb_001623_240 Hb_000261_510 Hb_000261_510 Hb_000699_110--Hb_000261_510 Hb_000175_040 Hb_000175_040 Hb_000699_110--Hb_000175_040 Hb_003057_050 Hb_003057_050 Hb_000699_110--Hb_003057_050 Hb_004724_140 Hb_004724_140 Hb_000699_110--Hb_004724_140 Hb_002226_030--Hb_000997_270 Hb_101832_010 Hb_101832_010 Hb_002226_030--Hb_101832_010 Hb_000127_010 Hb_000127_010 Hb_002226_030--Hb_000127_010 Hb_002111_050 Hb_002111_050 Hb_002226_030--Hb_002111_050 Hb_000041_080 Hb_000041_080 Hb_002226_030--Hb_000041_080 Hb_003376_100 Hb_003376_100 Hb_002226_030--Hb_003376_100 Hb_029921_010 Hb_029921_010 Hb_002900_140--Hb_029921_010 Hb_005739_010 Hb_005739_010 Hb_002900_140--Hb_005739_010 Hb_000065_070 Hb_000065_070 Hb_002900_140--Hb_000065_070 Hb_002900_140--Hb_000997_270 Hb_000630_040 Hb_000630_040 Hb_002900_140--Hb_000630_040 Hb_001373_150 Hb_001373_150 Hb_002301_290--Hb_001373_150 Hb_002471_100 Hb_002471_100 Hb_002301_290--Hb_002471_100 Hb_008554_020 Hb_008554_020 Hb_002301_290--Hb_008554_020 Hb_000390_200 Hb_000390_200 Hb_002301_290--Hb_000390_200 Hb_004310_030 Hb_004310_030 Hb_002301_290--Hb_004310_030 Hb_006501_110 Hb_006501_110 Hb_002301_290--Hb_006501_110 Hb_002603_130 Hb_002603_130 Hb_074197_010--Hb_002603_130 Hb_019033_010 Hb_019033_010 Hb_074197_010--Hb_019033_010 Hb_074197_010--Hb_002301_290 Hb_026428_010 Hb_026428_010 Hb_074197_010--Hb_026428_010 Hb_074197_010--Hb_002471_100 Hb_005829_010 Hb_005829_010 Hb_000997_270--Hb_005829_010 Hb_000997_270--Hb_003376_100 Hb_001616_080 Hb_001616_080 Hb_000997_270--Hb_001616_080 Hb_002284_090 Hb_002284_090 Hb_000997_270--Hb_002284_090 Hb_000997_270--Hb_000127_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.7889 2.26139 17.465 9.12391 35.7554 36.9383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
139.781 26.4107 22.8804 1.98842 21.5417

CAGE analysis