Hb_005892_070

Information

Type -
Description -
Location Contig5892: 76676-79864
Sequence    

Annotation

kegg
ID -
description -
nr
ID KHG07382.1
description Ribosomal L11 methyltransferase [Gossypium arboreum]
swissprot
ID D3KYU3
description Geranyl diphosphate 2-C-methyltransferase OS=Streptomyces lasaliensis GN=gdpmt PE=1 SV=1
trembl
ID A0A0B0N435
description Ribosomal L11 methyltransferase OS=Gossypium arboreum GN=F383_34635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005892_070 0.0 - - Ribosomal L11 methyltransferase [Gossypium arboreum]
2 Hb_000905_070 0.213172167 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
3 Hb_000153_040 0.2356270183 - - -
4 Hb_001125_030 0.239560343 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002759_130 0.2404940568 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000200_060 0.249674181 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
7 Hb_000345_480 0.2507065618 - - cyclin-dependent protein kinase, putative [Ricinus communis]
8 Hb_003494_260 0.2597237502 - - -
9 Hb_013983_010 0.2599857798 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
10 Hb_184629_010 0.260700405 - - UDP-Glycosyltransferase superfamily protein isoform 1 [Theobroma cacao]
11 Hb_158990_010 0.2647588992 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_087008_010 0.268477323 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
13 Hb_059436_010 0.2755355855 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_059126_010 0.2773012098 - - -
15 Hb_000028_630 0.2792262651 - - PIN-like protein, partial [Selaginella apoda]
16 Hb_029866_010 0.2808830117 - - -
17 Hb_134312_010 0.2820609845 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
18 Hb_004640_040 0.2915912044 - - -
19 Hb_001951_120 0.2927114249 - - -
20 Hb_000094_390 0.2927255453 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_005892_070 Hb_005892_070 Hb_000905_070 Hb_000905_070 Hb_005892_070--Hb_000905_070 Hb_000153_040 Hb_000153_040 Hb_005892_070--Hb_000153_040 Hb_001125_030 Hb_001125_030 Hb_005892_070--Hb_001125_030 Hb_002759_130 Hb_002759_130 Hb_005892_070--Hb_002759_130 Hb_000200_060 Hb_000200_060 Hb_005892_070--Hb_000200_060 Hb_000345_480 Hb_000345_480 Hb_005892_070--Hb_000345_480 Hb_171108_010 Hb_171108_010 Hb_000905_070--Hb_171108_010 Hb_002493_030 Hb_002493_030 Hb_000905_070--Hb_002493_030 Hb_000100_050 Hb_000100_050 Hb_000905_070--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_000905_070--Hb_011978_010 Hb_000375_380 Hb_000375_380 Hb_000905_070--Hb_000375_380 Hb_003494_260 Hb_003494_260 Hb_000153_040--Hb_003494_260 Hb_000153_040--Hb_000345_480 Hb_132629_010 Hb_132629_010 Hb_000153_040--Hb_132629_010 Hb_075570_010 Hb_075570_010 Hb_000153_040--Hb_075570_010 Hb_013983_010 Hb_013983_010 Hb_000153_040--Hb_013983_010 Hb_000007_310 Hb_000007_310 Hb_000153_040--Hb_000007_310 Hb_059126_010 Hb_059126_010 Hb_001125_030--Hb_059126_010 Hb_029866_010 Hb_029866_010 Hb_001125_030--Hb_029866_010 Hb_001125_030--Hb_013983_010 Hb_033225_020 Hb_033225_020 Hb_001125_030--Hb_033225_020 Hb_001125_030--Hb_000345_480 Hb_001125_030--Hb_000153_040 Hb_008147_030 Hb_008147_030 Hb_002759_130--Hb_008147_030 Hb_022749_030 Hb_022749_030 Hb_002759_130--Hb_022749_030 Hb_134732_010 Hb_134732_010 Hb_002759_130--Hb_134732_010 Hb_000548_010 Hb_000548_010 Hb_002759_130--Hb_000548_010 Hb_156144_020 Hb_156144_020 Hb_002759_130--Hb_156144_020 Hb_002759_130--Hb_000345_480 Hb_001741_100 Hb_001741_100 Hb_000200_060--Hb_001741_100 Hb_002234_220 Hb_002234_220 Hb_000200_060--Hb_002234_220 Hb_000200_060--Hb_134732_010 Hb_002124_020 Hb_002124_020 Hb_000200_060--Hb_002124_020 Hb_002217_130 Hb_002217_130 Hb_000200_060--Hb_002217_130 Hb_000200_060--Hb_000007_310 Hb_000345_480--Hb_003494_260 Hb_000345_480--Hb_013983_010 Hb_000345_480--Hb_075570_010 Hb_000345_480--Hb_132629_010 Hb_000345_480--Hb_029866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0913079 0 0.0180905 0 0.108493 0.020115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis