Hb_005895_010

Information

Type -
Description -
Location Contig5895: 20544-23740
Sequence    

Annotation

kegg
ID rcu:RCOM_1457960
description ring finger protein, putative
nr
ID XP_012083881.1
description PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19470 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50133: 20536-29194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005895_010 0.0 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
2 Hb_000362_170 0.0355794329 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
3 Hb_002539_110 0.0641104836 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
4 Hb_007800_020 0.065820021 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
5 Hb_002014_040 0.0663479183 - - site-1 protease, putative [Ricinus communis]
6 Hb_001002_060 0.0669410728 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
7 Hb_000640_070 0.0682333307 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
8 Hb_098209_010 0.0703531727 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
9 Hb_012215_010 0.0705823994 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
10 Hb_171334_010 0.07632349 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
11 Hb_003186_020 0.076934196 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
12 Hb_000635_040 0.0770969931 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
13 Hb_000373_080 0.0779507657 - - PREDICTED: serine decarboxylase [Jatropha curcas]
14 Hb_000214_050 0.0790822193 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
15 Hb_000317_510 0.0798040497 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
16 Hb_000820_150 0.0805561231 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
17 Hb_011972_020 0.0808237265 - - protein binding protein, putative [Ricinus communis]
18 Hb_010272_010 0.081380677 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
19 Hb_001619_050 0.0820970522 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
20 Hb_001153_050 0.0823715894 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005895_010 Hb_005895_010 Hb_000362_170 Hb_000362_170 Hb_005895_010--Hb_000362_170 Hb_002539_110 Hb_002539_110 Hb_005895_010--Hb_002539_110 Hb_007800_020 Hb_007800_020 Hb_005895_010--Hb_007800_020 Hb_002014_040 Hb_002014_040 Hb_005895_010--Hb_002014_040 Hb_001002_060 Hb_001002_060 Hb_005895_010--Hb_001002_060 Hb_000640_070 Hb_000640_070 Hb_005895_010--Hb_000640_070 Hb_000362_170--Hb_002014_040 Hb_001005_030 Hb_001005_030 Hb_000362_170--Hb_001005_030 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000373_080 Hb_000373_080 Hb_000362_170--Hb_000373_080 Hb_012215_010 Hb_012215_010 Hb_002539_110--Hb_012215_010 Hb_010272_010 Hb_010272_010 Hb_002539_110--Hb_010272_010 Hb_002539_110--Hb_000362_170 Hb_162275_040 Hb_162275_040 Hb_002539_110--Hb_162275_040 Hb_013726_080 Hb_013726_080 Hb_002539_110--Hb_013726_080 Hb_000635_040 Hb_000635_040 Hb_007800_020--Hb_000635_040 Hb_007800_020--Hb_000640_070 Hb_007800_020--Hb_000362_170 Hb_000608_350 Hb_000608_350 Hb_007800_020--Hb_000608_350 Hb_007800_020--Hb_001002_060 Hb_103747_020 Hb_103747_020 Hb_002014_040--Hb_103747_020 Hb_011972_020 Hb_011972_020 Hb_002014_040--Hb_011972_020 Hb_002014_040--Hb_010272_010 Hb_008226_090 Hb_008226_090 Hb_002014_040--Hb_008226_090 Hb_023313_040 Hb_023313_040 Hb_001002_060--Hb_023313_040 Hb_000737_030 Hb_000737_030 Hb_001002_060--Hb_000737_030 Hb_025668_010 Hb_025668_010 Hb_001002_060--Hb_025668_010 Hb_000261_210 Hb_000261_210 Hb_001002_060--Hb_000261_210 Hb_000640_070--Hb_012215_010 Hb_073973_150 Hb_073973_150 Hb_000640_070--Hb_073973_150 Hb_008397_010 Hb_008397_010 Hb_000640_070--Hb_008397_010 Hb_002784_030 Hb_002784_030 Hb_000640_070--Hb_002784_030 Hb_000640_070--Hb_010272_010 Hb_001194_020 Hb_001194_020 Hb_000640_070--Hb_001194_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1969 11.4567 18.7495 15.9928 13.0539 13.2802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43723 5.1019 5.88316 7.71728 14.2826

CAGE analysis