Hb_005895_040

Information

Type -
Description -
Location Contig5895: 108243-121090
Sequence    

Annotation

kegg
ID rcu:RCOM_0458510
description molybdopterin biosynthesis moeb protein, putative
nr
ID XP_012070171.1
description PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
swissprot
ID O13861
description tRNA threonylcarbamoyladenosine dehydratase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1A6.10 PE=3 SV=1
trembl
ID A0A067KXZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04243 PE=4 SV=1
Gene Ontology
ID GO:0009536
description nad -binding rossmann-fold superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50138: 108231-120997 , PASA_asmbl_50141: 107152-108875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005895_040 0.0 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
2 Hb_000422_140 0.0629782851 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
3 Hb_009151_020 0.0697025902 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
4 Hb_002477_130 0.0697904205 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004656_060 0.0741111311 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
6 Hb_004701_030 0.077207433 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
7 Hb_002499_070 0.0783522329 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
8 Hb_000640_220 0.0802085368 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
9 Hb_091384_010 0.0823200279 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
10 Hb_000365_140 0.0837193956 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
11 Hb_000358_250 0.0845411094 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
12 Hb_002411_120 0.086653147 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
13 Hb_000261_520 0.0894277874 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
14 Hb_020665_030 0.0896632582 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000640_020 0.0899921356 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
16 Hb_028707_090 0.0914002217 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
17 Hb_000866_470 0.0914613757 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
18 Hb_144787_030 0.0923080046 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
19 Hb_000424_010 0.0924694553 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
20 Hb_008595_010 0.092788558 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_005895_040 Hb_005895_040 Hb_000422_140 Hb_000422_140 Hb_005895_040--Hb_000422_140 Hb_009151_020 Hb_009151_020 Hb_005895_040--Hb_009151_020 Hb_002477_130 Hb_002477_130 Hb_005895_040--Hb_002477_130 Hb_004656_060 Hb_004656_060 Hb_005895_040--Hb_004656_060 Hb_004701_030 Hb_004701_030 Hb_005895_040--Hb_004701_030 Hb_002499_070 Hb_002499_070 Hb_005895_040--Hb_002499_070 Hb_144787_030 Hb_144787_030 Hb_000422_140--Hb_144787_030 Hb_000422_140--Hb_004656_060 Hb_000946_120 Hb_000946_120 Hb_000422_140--Hb_000946_120 Hb_000365_140 Hb_000365_140 Hb_000422_140--Hb_000365_140 Hb_000422_140--Hb_002477_130 Hb_000347_570 Hb_000347_570 Hb_009151_020--Hb_000347_570 Hb_020665_030 Hb_020665_030 Hb_009151_020--Hb_020665_030 Hb_000329_130 Hb_000329_130 Hb_009151_020--Hb_000329_130 Hb_001178_150 Hb_001178_150 Hb_009151_020--Hb_001178_150 Hb_001473_090 Hb_001473_090 Hb_009151_020--Hb_001473_090 Hb_000914_080 Hb_000914_080 Hb_009151_020--Hb_000914_080 Hb_002477_130--Hb_000365_140 Hb_000424_010 Hb_000424_010 Hb_002477_130--Hb_000424_010 Hb_000640_220 Hb_000640_220 Hb_002477_130--Hb_000640_220 Hb_000358_250 Hb_000358_250 Hb_002477_130--Hb_000358_250 Hb_001771_120 Hb_001771_120 Hb_002477_130--Hb_001771_120 Hb_004656_060--Hb_004701_030 Hb_023001_020 Hb_023001_020 Hb_004656_060--Hb_023001_020 Hb_004656_060--Hb_000640_220 Hb_002587_020 Hb_002587_020 Hb_004656_060--Hb_002587_020 Hb_004701_030--Hb_023001_020 Hb_003091_010 Hb_003091_010 Hb_004701_030--Hb_003091_010 Hb_004678_020 Hb_004678_020 Hb_004701_030--Hb_004678_020 Hb_000104_080 Hb_000104_080 Hb_004701_030--Hb_000104_080 Hb_004162_280 Hb_004162_280 Hb_002499_070--Hb_004162_280 Hb_002499_070--Hb_144787_030 Hb_001902_060 Hb_001902_060 Hb_002499_070--Hb_001902_060 Hb_002411_120 Hb_002411_120 Hb_002499_070--Hb_002411_120 Hb_000152_340 Hb_000152_340 Hb_002499_070--Hb_000152_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.54932 3.04985 2.10434 1.66153 7.93115 5.73584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43917 2.33174 1.49621 1.86977 1.55374

CAGE analysis