Hb_005901_020

Information

Type -
Description -
Location Contig5901: 43292-46375
Sequence    

Annotation

kegg
ID rcu:RCOM_1548160
description translation elongation factor, putative
nr
ID XP_012066332.1
description PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q8C0D5
description Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1
trembl
ID A0A067LFR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23896 PE=4 SV=1
Gene Ontology
ID GO:0005829
description elongation factor tu gtp-binding domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005901_020 0.0 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
2 Hb_001199_100 0.0700220646 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
3 Hb_001496_070 0.0706169825 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
4 Hb_003253_040 0.0712078377 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
5 Hb_001449_040 0.0715733456 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
6 Hb_004032_380 0.071994214 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
7 Hb_003294_090 0.0760318734 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004143_130 0.0810303685 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
9 Hb_000803_260 0.0818395799 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
10 Hb_001700_040 0.0840232042 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
11 Hb_002667_050 0.0843080891 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
12 Hb_001329_140 0.0863049387 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
13 Hb_172632_080 0.0869552562 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
14 Hb_002740_110 0.0871675513 - - PREDICTED: phytochrome A [Jatropha curcas]
15 Hb_000236_310 0.087860695 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
16 Hb_010417_050 0.0884367779 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
17 Hb_002493_020 0.0917501189 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
18 Hb_002974_060 0.0927440196 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
19 Hb_000174_180 0.0933083703 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000028_280 0.0934640782 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]

Gene co-expression network

sample Hb_005901_020 Hb_005901_020 Hb_001199_100 Hb_001199_100 Hb_005901_020--Hb_001199_100 Hb_001496_070 Hb_001496_070 Hb_005901_020--Hb_001496_070 Hb_003253_040 Hb_003253_040 Hb_005901_020--Hb_003253_040 Hb_001449_040 Hb_001449_040 Hb_005901_020--Hb_001449_040 Hb_004032_380 Hb_004032_380 Hb_005901_020--Hb_004032_380 Hb_003294_090 Hb_003294_090 Hb_005901_020--Hb_003294_090 Hb_001199_100--Hb_003253_040 Hb_000343_120 Hb_000343_120 Hb_001199_100--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_001199_100--Hb_000166_130 Hb_000613_050 Hb_000613_050 Hb_001199_100--Hb_000613_050 Hb_009545_100 Hb_009545_100 Hb_001199_100--Hb_009545_100 Hb_172632_080 Hb_172632_080 Hb_001199_100--Hb_172632_080 Hb_002493_020 Hb_002493_020 Hb_001496_070--Hb_002493_020 Hb_001496_070--Hb_001449_040 Hb_000362_150 Hb_000362_150 Hb_001496_070--Hb_000362_150 Hb_000983_150 Hb_000983_150 Hb_001496_070--Hb_000983_150 Hb_002974_060 Hb_002974_060 Hb_001496_070--Hb_002974_060 Hb_002740_110 Hb_002740_110 Hb_003253_040--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003253_040--Hb_010174_110 Hb_002942_100 Hb_002942_100 Hb_003253_040--Hb_002942_100 Hb_002063_020 Hb_002063_020 Hb_003253_040--Hb_002063_020 Hb_004143_130 Hb_004143_130 Hb_003253_040--Hb_004143_130 Hb_056691_060 Hb_056691_060 Hb_001449_040--Hb_056691_060 Hb_000008_290 Hb_000008_290 Hb_001449_040--Hb_000008_290 Hb_001449_040--Hb_000613_050 Hb_001343_040 Hb_001343_040 Hb_001449_040--Hb_001343_040 Hb_004032_380--Hb_002740_110 Hb_004032_380--Hb_004143_130 Hb_004032_380--Hb_010174_110 Hb_004032_380--Hb_003253_040 Hb_000028_280 Hb_000028_280 Hb_004032_380--Hb_000028_280 Hb_003294_090--Hb_003253_040 Hb_003294_090--Hb_002740_110 Hb_003294_090--Hb_010174_110 Hb_015175_020 Hb_015175_020 Hb_003294_090--Hb_015175_020 Hb_003294_090--Hb_002063_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9509 13.4289 3.60098 11.2144 13.3291 21.5354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.176 7.84146 16.5563 17.1536 17.6621

CAGE analysis