Hb_005903_020

Information

Type -
Description -
Location Contig5903: 55851-62737
Sequence    

Annotation

kegg
ID tcc:TCM_036537
description 12-oxophytodienoate reductase 2
nr
ID XP_007020161.1
description 12-oxophytodienoate reductase 2 [Theobroma cacao]
swissprot
ID Q8GYB8
description 12-oxophytodienoate reductase 2 OS=Arabidopsis thaliana GN=OPR2 PE=1 SV=2
trembl
ID A0A061FJX4
description 12-oxophytodienoate reductase 2 OS=Theobroma cacao GN=TCM_036537 PE=4 SV=1
Gene Ontology
ID GO:0010181
description 12-oxophytodienoate reductase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50210: 30961-62743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005903_020 0.0 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
2 Hb_006438_020 0.0992904208 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
3 Hb_007426_220 0.0998352878 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
4 Hb_001232_090 0.1052561059 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
5 Hb_011716_010 0.1073718111 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
6 Hb_004108_210 0.1113621868 - - phenazine biosynthesis protein, putative [Ricinus communis]
7 Hb_000926_060 0.1123416822 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000678_010 0.1149890915 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
9 Hb_001221_580 0.1151819362 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
10 Hb_005144_210 0.1166186814 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000229_050 0.1172939098 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
12 Hb_061256_010 0.1193445182 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
13 Hb_000098_180 0.1194176997 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
14 Hb_000098_150 0.1207875569 - - DNA helicase hus2, putative [Ricinus communis]
15 Hb_002871_040 0.121184562 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
16 Hb_001117_080 0.1219054128 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
17 Hb_000260_400 0.1226614457 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
18 Hb_002687_180 0.1228179606 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
19 Hb_000589_170 0.1236840349 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
20 Hb_000579_080 0.1244505569 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_005903_020 Hb_005903_020 Hb_006438_020 Hb_006438_020 Hb_005903_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_005903_020--Hb_007426_220 Hb_001232_090 Hb_001232_090 Hb_005903_020--Hb_001232_090 Hb_011716_010 Hb_011716_010 Hb_005903_020--Hb_011716_010 Hb_004108_210 Hb_004108_210 Hb_005903_020--Hb_004108_210 Hb_000926_060 Hb_000926_060 Hb_005903_020--Hb_000926_060 Hb_012633_050 Hb_012633_050 Hb_006438_020--Hb_012633_050 Hb_002445_030 Hb_002445_030 Hb_006438_020--Hb_002445_030 Hb_002687_180 Hb_002687_180 Hb_006438_020--Hb_002687_180 Hb_006438_020--Hb_011716_010 Hb_021596_020 Hb_021596_020 Hb_006438_020--Hb_021596_020 Hb_061256_010 Hb_061256_010 Hb_006438_020--Hb_061256_010 Hb_011671_340 Hb_011671_340 Hb_007426_220--Hb_011671_340 Hb_000620_020 Hb_000620_020 Hb_007426_220--Hb_000620_020 Hb_001155_050 Hb_001155_050 Hb_007426_220--Hb_001155_050 Hb_001511_030 Hb_001511_030 Hb_007426_220--Hb_001511_030 Hb_002871_040 Hb_002871_040 Hb_007426_220--Hb_002871_040 Hb_013405_070 Hb_013405_070 Hb_001232_090--Hb_013405_070 Hb_005271_140 Hb_005271_140 Hb_001232_090--Hb_005271_140 Hb_000406_030 Hb_000406_030 Hb_001232_090--Hb_000406_030 Hb_011381_040 Hb_011381_040 Hb_001232_090--Hb_011381_040 Hb_004155_020 Hb_004155_020 Hb_001232_090--Hb_004155_020 Hb_001279_190 Hb_001279_190 Hb_011716_010--Hb_001279_190 Hb_011716_010--Hb_002687_180 Hb_007483_070 Hb_007483_070 Hb_011716_010--Hb_007483_070 Hb_001504_010 Hb_001504_010 Hb_011716_010--Hb_001504_010 Hb_004228_120 Hb_004228_120 Hb_011716_010--Hb_004228_120 Hb_000098_150 Hb_000098_150 Hb_004108_210--Hb_000098_150 Hb_005144_210 Hb_005144_210 Hb_004108_210--Hb_005144_210 Hb_001221_580 Hb_001221_580 Hb_004108_210--Hb_001221_580 Hb_000296_010 Hb_000296_010 Hb_004108_210--Hb_000296_010 Hb_004712_190 Hb_004712_190 Hb_004108_210--Hb_004712_190 Hb_000579_080 Hb_000579_080 Hb_000926_060--Hb_000579_080 Hb_070624_010 Hb_070624_010 Hb_000926_060--Hb_070624_010 Hb_003680_220 Hb_003680_220 Hb_000926_060--Hb_003680_220 Hb_000500_220 Hb_000500_220 Hb_000926_060--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000926_060--Hb_008725_270 Hb_000358_210 Hb_000358_210 Hb_000926_060--Hb_000358_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4623 3.29871 11.6751 6.0459 1.40196 1.3678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.56364 1.66935 2.40567 5.23749 3.34646

CAGE analysis