Hb_005908_040

Information

Type -
Description -
Location Contig5908: 24078-25879
Sequence    

Annotation

kegg
ID pop:POPTR_0017s06850g
description hypothetical protein
nr
ID XP_006372995.1
description hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9P921
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s06850g PE=2 SV=1
Gene Ontology
ID GO:0016021
description gpi inositol-deacylase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50214: 24080-25894
cDNA
(Sanger)
(ID:Location)		 003_B19.ab1: 24080-25880 , 019_G15.ab1: 24080-25894 , 026_C11.ab1: 24075-25856 , 026_G13.ab1: 24075-25877 , 035_E15.ab1: 24080-25892 , 052_M16.ab1: 24080-25880

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005908_040 0.0 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
2 Hb_005137_020 0.0927029224 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
3 Hb_010172_100 0.0991296418 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
4 Hb_001102_250 0.1093238566 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
5 Hb_004297_040 0.1124087866 - - acyl CoA reductase [Hevea brasiliensis]
6 Hb_003095_070 0.1170115623 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
7 Hb_000544_110 0.118337121 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
8 Hb_072912_020 0.1303394635 - - abhydrolase domain containing, putative [Ricinus communis]
9 Hb_078633_010 0.1320282312 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
10 Hb_003060_030 0.1321923951 - - conserved hypothetical protein 16 [Hevea brasiliensis]
11 Hb_002260_090 0.1336859026 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
12 Hb_011671_400 0.1355550506 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
13 Hb_000316_100 0.1359348035 - - protein with unknown function [Ricinus communis]
14 Hb_006351_110 0.136209505 - - -
15 Hb_000367_280 0.1477594642 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
16 Hb_103752_010 0.1483479693 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
17 Hb_001276_060 0.1528273914 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
18 Hb_010594_030 0.1554322264 - - -
19 Hb_002045_230 0.1584417945 - - Ammonium transporter 2 [Theobroma cacao]
20 Hb_001213_120 0.1592871903 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]

Gene co-expression network

sample Hb_005908_040 Hb_005908_040 Hb_005137_020 Hb_005137_020 Hb_005908_040--Hb_005137_020 Hb_010172_100 Hb_010172_100 Hb_005908_040--Hb_010172_100 Hb_001102_250 Hb_001102_250 Hb_005908_040--Hb_001102_250 Hb_004297_040 Hb_004297_040 Hb_005908_040--Hb_004297_040 Hb_003095_070 Hb_003095_070 Hb_005908_040--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_005908_040--Hb_000544_110 Hb_005137_020--Hb_000544_110 Hb_072912_020 Hb_072912_020 Hb_005137_020--Hb_072912_020 Hb_078633_010 Hb_078633_010 Hb_005137_020--Hb_078633_010 Hb_005137_020--Hb_001102_250 Hb_005137_020--Hb_004297_040 Hb_006351_110 Hb_006351_110 Hb_010172_100--Hb_006351_110 Hb_010172_100--Hb_005137_020 Hb_000316_100 Hb_000316_100 Hb_010172_100--Hb_000316_100 Hb_001007_050 Hb_001007_050 Hb_010172_100--Hb_001007_050 Hb_001922_080 Hb_001922_080 Hb_010172_100--Hb_001922_080 Hb_001102_250--Hb_072912_020 Hb_001102_250--Hb_003095_070 Hb_001102_250--Hb_000544_110 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_001102_250--Hb_004297_040 Hb_000367_280 Hb_000367_280 Hb_004297_040--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_004297_040--Hb_001213_120 Hb_004297_040--Hb_078633_010 Hb_001268_080 Hb_001268_080 Hb_004297_040--Hb_001268_080 Hb_001276_060 Hb_001276_060 Hb_003095_070--Hb_001276_060 Hb_000788_080 Hb_000788_080 Hb_003095_070--Hb_000788_080 Hb_011671_400 Hb_011671_400 Hb_003095_070--Hb_011671_400 Hb_003095_070--Hb_072912_020 Hb_000544_110--Hb_072912_020 Hb_000544_110--Hb_078633_010 Hb_008066_040 Hb_008066_040 Hb_000544_110--Hb_008066_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
363.593 7.26348 4.06163 15.7217 106.075 227.977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
799.858 1495.84 733.431 34.4483 3.55727

CAGE analysis