Hb_005914_060

Information

Type -
Description -
Location Contig5914: 30601-40112
Sequence    

Annotation

kegg
ID rcu:RCOM_1168220
description splicing factor u2af large subunit, putative
nr
ID XP_012069885.1
description PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
swissprot
ID Q24562
description Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=1 SV=1
trembl
ID A0A067L8D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02367 PE=4 SV=1
Gene Ontology
ID GO:0097159
description splicing factor u2af large subunit a-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50227: 31662-32626 , PASA_asmbl_50228: 32627-32977 , PASA_asmbl_50229: 40234-40553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_060 0.0 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
2 Hb_023386_040 0.0564848166 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
3 Hb_000926_190 0.0614150478 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_000179_030 0.062866533 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
5 Hb_142439_010 0.0641268687 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
6 Hb_000768_110 0.0647618317 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
7 Hb_003428_070 0.0654141985 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
8 Hb_008159_020 0.0666293671 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
9 Hb_006252_040 0.0697608848 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
10 Hb_003935_030 0.0727145115 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
11 Hb_000334_270 0.0738076235 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_010193_050 0.0754265055 - - conserved hypothetical protein [Ricinus communis]
13 Hb_185679_010 0.075732562 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
14 Hb_002960_160 0.0760656979 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
15 Hb_002044_060 0.0763517793 - - elongation factor ts, putative [Ricinus communis]
16 Hb_003952_070 0.0766870976 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_004096_100 0.079133902 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
18 Hb_012098_110 0.0796343467 - - Ribonuclease 3 [Gossypium arboreum]
19 Hb_000820_170 0.0798104256 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
20 Hb_000567_010 0.0799375206 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]

Gene co-expression network

sample Hb_005914_060 Hb_005914_060 Hb_023386_040 Hb_023386_040 Hb_005914_060--Hb_023386_040 Hb_000926_190 Hb_000926_190 Hb_005914_060--Hb_000926_190 Hb_000179_030 Hb_000179_030 Hb_005914_060--Hb_000179_030 Hb_142439_010 Hb_142439_010 Hb_005914_060--Hb_142439_010 Hb_000768_110 Hb_000768_110 Hb_005914_060--Hb_000768_110 Hb_003428_070 Hb_003428_070 Hb_005914_060--Hb_003428_070 Hb_154745_010 Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_023386_040--Hb_000926_190 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_023386_020 Hb_023386_020 Hb_000926_190--Hb_023386_020 Hb_007054_060 Hb_007054_060 Hb_000926_190--Hb_007054_060 Hb_000334_270 Hb_000334_270 Hb_000926_190--Hb_000334_270 Hb_000794_050 Hb_000794_050 Hb_000926_190--Hb_000794_050 Hb_000879_200 Hb_000879_200 Hb_000926_190--Hb_000879_200 Hb_006355_010 Hb_006355_010 Hb_000179_030--Hb_006355_010 Hb_008159_020 Hb_008159_020 Hb_000179_030--Hb_008159_020 Hb_001486_340 Hb_001486_340 Hb_000179_030--Hb_001486_340 Hb_000308_030 Hb_000308_030 Hb_000179_030--Hb_000308_030 Hb_001430_120 Hb_001430_120 Hb_142439_010--Hb_001430_120 Hb_142439_010--Hb_003952_070 Hb_000189_340 Hb_000189_340 Hb_142439_010--Hb_000189_340 Hb_000008_330 Hb_000008_330 Hb_142439_010--Hb_000008_330 Hb_075481_030 Hb_075481_030 Hb_142439_010--Hb_075481_030 Hb_000567_010 Hb_000567_010 Hb_000768_110--Hb_000567_010 Hb_000768_110--Hb_008159_020 Hb_000160_040 Hb_000160_040 Hb_000768_110--Hb_000160_040 Hb_010193_050 Hb_010193_050 Hb_000768_110--Hb_010193_050 Hb_000173_510 Hb_000173_510 Hb_000768_110--Hb_000173_510 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_003428_070--Hb_000173_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0875 8.95518 5.81117 3.99957 11.7001 16.2212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.38504 7.68582 4.97454 6.74743 5.16497

CAGE analysis