Hb_005914_070

Information

Type -
Description -
Location Contig5914: 41454-46283
Sequence    

Annotation

kegg
ID rcu:RCOM_1168100
description hypothetical protein
nr
ID XP_002528811.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SS42
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1168100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_091433_040 0.1024427214 - - PREDICTED: josephin-like protein [Jatropha curcas]
3 Hb_003052_040 0.1472322187 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000227_200 0.1480480254 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
5 Hb_113906_010 0.1616348083 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
6 Hb_000111_010 0.1671461388 - - DNA-directed RNA polymerase, putative [Ricinus communis]
7 Hb_001369_450 0.1708878467 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
8 Hb_014497_110 0.1771127488 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
9 Hb_004333_020 0.1789646601 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
10 Hb_000103_110 0.1799757111 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
11 Hb_000788_080 0.1813302767 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
12 Hb_005000_160 0.1826688713 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
13 Hb_000784_040 0.1864591128 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
14 Hb_012053_040 0.1866781762 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
15 Hb_001894_170 0.1879109067 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
16 Hb_000193_240 0.1912436442 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
17 Hb_001396_190 0.1912860249 - - PREDICTED: uncharacterized protein LOC105123025 [Populus euphratica]
18 Hb_002759_240 0.1914335452 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
19 Hb_000450_020 0.1940602417 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011671_400 0.1952602262 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]

Gene co-expression network

sample Hb_005914_070 Hb_005914_070 Hb_091433_040 Hb_091433_040 Hb_005914_070--Hb_091433_040 Hb_003052_040 Hb_003052_040 Hb_005914_070--Hb_003052_040 Hb_000227_200 Hb_000227_200 Hb_005914_070--Hb_000227_200 Hb_113906_010 Hb_113906_010 Hb_005914_070--Hb_113906_010 Hb_000111_010 Hb_000111_010 Hb_005914_070--Hb_000111_010 Hb_001369_450 Hb_001369_450 Hb_005914_070--Hb_001369_450 Hb_091433_040--Hb_113906_010 Hb_091433_040--Hb_000227_200 Hb_000450_020 Hb_000450_020 Hb_091433_040--Hb_000450_020 Hb_091433_040--Hb_000111_010 Hb_000784_040 Hb_000784_040 Hb_091433_040--Hb_000784_040 Hb_011671_400 Hb_011671_400 Hb_003052_040--Hb_011671_400 Hb_002260_090 Hb_002260_090 Hb_003052_040--Hb_002260_090 Hb_001396_190 Hb_001396_190 Hb_003052_040--Hb_001396_190 Hb_078633_010 Hb_078633_010 Hb_003052_040--Hb_078633_010 Hb_014497_110 Hb_014497_110 Hb_003052_040--Hb_014497_110 Hb_000227_200--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_000227_200--Hb_001587_210 Hb_001741_040 Hb_001741_040 Hb_000227_200--Hb_001741_040 Hb_042223_010 Hb_042223_010 Hb_000227_200--Hb_042223_010 Hb_004942_020 Hb_004942_020 Hb_113906_010--Hb_004942_020 Hb_012586_020 Hb_012586_020 Hb_113906_010--Hb_012586_020 Hb_012053_040 Hb_012053_040 Hb_113906_010--Hb_012053_040 Hb_003095_070 Hb_003095_070 Hb_113906_010--Hb_003095_070 Hb_000788_080 Hb_000788_080 Hb_000111_010--Hb_000788_080 Hb_000111_010--Hb_012053_040 Hb_000103_110 Hb_000103_110 Hb_000111_010--Hb_000103_110 Hb_000363_150 Hb_000363_150 Hb_000111_010--Hb_000363_150 Hb_012545_050 Hb_012545_050 Hb_001369_450--Hb_012545_050 Hb_002067_140 Hb_002067_140 Hb_001369_450--Hb_002067_140 Hb_001776_170 Hb_001776_170 Hb_001369_450--Hb_001776_170 Hb_002759_240 Hb_002759_240 Hb_001369_450--Hb_002759_240 Hb_001511_140 Hb_001511_140 Hb_001369_450--Hb_001511_140 Hb_000979_250 Hb_000979_250 Hb_001369_450--Hb_000979_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3759 0.237465 0.0976917 0.0867958 0.207425 0.406886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.88825 5.73731 8.30961 0.595296 0

CAGE analysis