Hb_005914_080

Information

Type -
Description -
Location Contig5914: 50106-57273
Sequence    

Annotation

kegg
ID pop:POPTR_0008s17020g
description POPTRDRAFT_803768; cyclopropane-fatty-acyl-phospholipid synthase family protein
nr
ID XP_012069890.1
description PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
swissprot
ID O53732
description Tuberculostearic acid methyltransferase UfaA1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=ufaA1 PE=1 SV=3
trembl
ID A0A067KZG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02371 PE=4 SV=1
Gene Ontology
ID GO:0016740
description cyclopropane-fatty-acyl-phospholipid synthase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50231: 54391-54915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_080 0.0 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
2 Hb_144528_010 0.0849119658 - - type II inositol 5-phosphatase, putative [Ricinus communis]
3 Hb_000009_240 0.0851345967 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
4 Hb_005731_120 0.0863324925 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
5 Hb_000023_280 0.0872917162 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
6 Hb_005188_080 0.0919214939 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_003940_040 0.0985941679 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002473_130 0.098650804 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
9 Hb_000406_080 0.0996439318 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
10 Hb_003038_210 0.10069302 - - hypothetical protein B456_006G076400 [Gossypium raimondii]
11 Hb_022833_100 0.1007316476 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
12 Hb_002685_110 0.1021864257 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
13 Hb_001168_020 0.102664425 - - PREDICTED: translation initiation factor eIF-2B subunit gamma [Jatropha curcas]
14 Hb_003777_320 0.1037089017 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
15 Hb_002271_020 0.1044539524 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
16 Hb_011485_070 0.1047944582 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
17 Hb_021238_050 0.1052906096 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000318_290 0.105661782 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
19 Hb_004767_100 0.1058170286 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
20 Hb_002675_070 0.1059370757 - - PREDICTED: protein CASC3 [Jatropha curcas]

Gene co-expression network

sample Hb_005914_080 Hb_005914_080 Hb_144528_010 Hb_144528_010 Hb_005914_080--Hb_144528_010 Hb_000009_240 Hb_000009_240 Hb_005914_080--Hb_000009_240 Hb_005731_120 Hb_005731_120 Hb_005914_080--Hb_005731_120 Hb_000023_280 Hb_000023_280 Hb_005914_080--Hb_000023_280 Hb_005188_080 Hb_005188_080 Hb_005914_080--Hb_005188_080 Hb_003940_040 Hb_003940_040 Hb_005914_080--Hb_003940_040 Hb_005269_040 Hb_005269_040 Hb_144528_010--Hb_005269_040 Hb_001538_130 Hb_001538_130 Hb_144528_010--Hb_001538_130 Hb_144528_010--Hb_005731_120 Hb_001287_080 Hb_001287_080 Hb_144528_010--Hb_001287_080 Hb_007881_030 Hb_007881_030 Hb_144528_010--Hb_007881_030 Hb_000318_290 Hb_000318_290 Hb_000009_240--Hb_000318_290 Hb_002391_270 Hb_002391_270 Hb_000009_240--Hb_002391_270 Hb_004767_100 Hb_004767_100 Hb_000009_240--Hb_004767_100 Hb_003777_310 Hb_003777_310 Hb_000009_240--Hb_003777_310 Hb_000009_240--Hb_003940_040 Hb_002235_170 Hb_002235_170 Hb_005731_120--Hb_002235_170 Hb_005291_030 Hb_005291_030 Hb_005731_120--Hb_005291_030 Hb_000031_220 Hb_000031_220 Hb_005731_120--Hb_000031_220 Hb_020665_040 Hb_020665_040 Hb_005731_120--Hb_020665_040 Hb_010142_030 Hb_010142_030 Hb_000023_280--Hb_010142_030 Hb_003761_010 Hb_003761_010 Hb_000023_280--Hb_003761_010 Hb_004143_040 Hb_004143_040 Hb_000023_280--Hb_004143_040 Hb_000645_090 Hb_000645_090 Hb_000023_280--Hb_000645_090 Hb_001215_040 Hb_001215_040 Hb_000023_280--Hb_001215_040 Hb_000116_410 Hb_000116_410 Hb_000023_280--Hb_000116_410 Hb_000015_040 Hb_000015_040 Hb_005188_080--Hb_000015_040 Hb_000680_160 Hb_000680_160 Hb_005188_080--Hb_000680_160 Hb_002078_350 Hb_002078_350 Hb_005188_080--Hb_002078_350 Hb_001545_170 Hb_001545_170 Hb_005188_080--Hb_001545_170 Hb_001579_220 Hb_001579_220 Hb_005188_080--Hb_001579_220 Hb_005188_080--Hb_000645_090 Hb_099878_030 Hb_099878_030 Hb_003940_040--Hb_099878_030 Hb_003940_040--Hb_010142_030 Hb_000392_190 Hb_000392_190 Hb_003940_040--Hb_000392_190 Hb_004109_310 Hb_004109_310 Hb_003940_040--Hb_004109_310 Hb_003940_040--Hb_000023_280 Hb_000140_280 Hb_000140_280 Hb_003940_040--Hb_000140_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.224144 0.304921 0.106732 0.47185 0.243974 0.554886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.522888 0.473809 0.30962 0.366145 0.239048

CAGE analysis