Hb_005914_110

Information

Type -
Description -
Location Contig5914: 65780-70428
Sequence    

Annotation

kegg
ID rcu:RCOM_1217920
description hypothetical protein
nr
ID XP_012069896.1
description PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SQV6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1217920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50236: 65729-70543 , PASA_asmbl_50237: 66844-66977 , PASA_asmbl_50238: 69219-69376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_110 0.0 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
2 Hb_000365_270 0.0927482925 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
3 Hb_053709_050 0.1015810812 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000723_230 0.1040147193 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
5 Hb_000926_200 0.1068254882 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
6 Hb_000622_130 0.1081466749 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
7 Hb_005867_090 0.1083456824 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
8 Hb_004984_030 0.1088723259 - - protein with unknown function [Ricinus communis]
9 Hb_000733_200 0.1098689279 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
10 Hb_000086_140 0.1112217201 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
11 Hb_000069_640 0.1135426913 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
12 Hb_000964_030 0.1151774075 - - ADP/ATP carrier 2 [Theobroma cacao]
13 Hb_038574_010 0.1155470611 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
14 Hb_002333_070 0.1192887862 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
15 Hb_002693_030 0.1193027025 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]
16 Hb_007317_010 0.1194784726 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000832_190 0.1207616845 - - Rab3 [Hevea brasiliensis]
18 Hb_005653_070 0.1209376675 - - K+ transport growth defect-like protein [Hevea brasiliensis]
19 Hb_000189_570 0.1221334429 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
20 Hb_002028_090 0.1225740243 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]

Gene co-expression network

sample Hb_005914_110 Hb_005914_110 Hb_000365_270 Hb_000365_270 Hb_005914_110--Hb_000365_270 Hb_053709_050 Hb_053709_050 Hb_005914_110--Hb_053709_050 Hb_000723_230 Hb_000723_230 Hb_005914_110--Hb_000723_230 Hb_000926_200 Hb_000926_200 Hb_005914_110--Hb_000926_200 Hb_000622_130 Hb_000622_130 Hb_005914_110--Hb_000622_130 Hb_005867_090 Hb_005867_090 Hb_005914_110--Hb_005867_090 Hb_004108_220 Hb_004108_220 Hb_000365_270--Hb_004108_220 Hb_000603_160 Hb_000603_160 Hb_000365_270--Hb_000603_160 Hb_005653_070 Hb_005653_070 Hb_000365_270--Hb_005653_070 Hb_000365_270--Hb_053709_050 Hb_005563_070 Hb_005563_070 Hb_000365_270--Hb_005563_070 Hb_006846_130 Hb_006846_130 Hb_000365_270--Hb_006846_130 Hb_001633_090 Hb_001633_090 Hb_053709_050--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_053709_050--Hb_007850_030 Hb_006637_030 Hb_006637_030 Hb_053709_050--Hb_006637_030 Hb_053709_050--Hb_000603_160 Hb_002693_030 Hb_002693_030 Hb_053709_050--Hb_002693_030 Hb_189216_010 Hb_189216_010 Hb_053709_050--Hb_189216_010 Hb_000723_230--Hb_006637_030 Hb_000723_230--Hb_005653_070 Hb_001728_040 Hb_001728_040 Hb_000723_230--Hb_001728_040 Hb_000465_300 Hb_000465_300 Hb_000723_230--Hb_000465_300 Hb_000684_040 Hb_000684_040 Hb_000723_230--Hb_000684_040 Hb_006060_020 Hb_006060_020 Hb_000723_230--Hb_006060_020 Hb_000035_160 Hb_000035_160 Hb_000926_200--Hb_000035_160 Hb_040819_010 Hb_040819_010 Hb_000926_200--Hb_040819_010 Hb_032202_100 Hb_032202_100 Hb_000926_200--Hb_032202_100 Hb_004984_030 Hb_004984_030 Hb_000926_200--Hb_004984_030 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_000152_600 Hb_000152_600 Hb_000622_130--Hb_000152_600 Hb_001191_080 Hb_001191_080 Hb_000622_130--Hb_001191_080 Hb_000916_070 Hb_000916_070 Hb_000622_130--Hb_000916_070 Hb_000832_190 Hb_000832_190 Hb_000622_130--Hb_000832_190 Hb_000622_130--Hb_000926_200 Hb_000733_200 Hb_000733_200 Hb_005867_090--Hb_000733_200 Hb_007317_010 Hb_007317_010 Hb_005867_090--Hb_007317_010 Hb_164010_040 Hb_164010_040 Hb_005867_090--Hb_164010_040 Hb_000086_140 Hb_000086_140 Hb_005867_090--Hb_000086_140 Hb_001124_010 Hb_001124_010 Hb_005867_090--Hb_001124_010 Hb_001437_150 Hb_001437_150 Hb_005867_090--Hb_001437_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.9665 11.79 19.4052 21.2712 2.68149 6.00336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.90989 17.8049 13.291 8.60258 8.16551

CAGE analysis