Hb_005914_130

Information

Type -
Description -
Location Contig5914: 75501-76664
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50239: 73777-80484 , PASA_asmbl_50243: 73643-75756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_130 0.0 - - -
2 Hb_010457_040 0.1649739824 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
3 Hb_003411_120 0.1719944753 - - hypothetical protein POPTR_0010s13670g [Populus trichocarpa]
4 Hb_000482_080 0.1781572412 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
5 Hb_001758_090 0.1838383114 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
6 Hb_000291_240 0.1843963387 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
7 Hb_007311_050 0.1859710648 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011344_110 0.1901529989 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
9 Hb_000244_290 0.1918680575 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
10 Hb_000193_130 0.1943154057 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_000991_060 0.1955112884 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
12 Hb_000580_210 0.1955995383 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
13 Hb_000645_080 0.1964409247 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_008406_170 0.1990361798 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_017914_020 0.1998103466 - - -
16 Hb_000617_300 0.1998433594 - - RALFL33, putative [Ricinus communis]
17 Hb_009486_030 0.2010732415 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Jatropha curcas]
18 Hb_001343_060 0.2019712206 - - Cytochrome P450 [Theobroma cacao]
19 Hb_004586_410 0.2022488855 - - ring finger protein, putative [Ricinus communis]
20 Hb_000243_240 0.2027976171 - - cytochrome P450 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005914_130 Hb_005914_130 Hb_010457_040 Hb_010457_040 Hb_005914_130--Hb_010457_040 Hb_003411_120 Hb_003411_120 Hb_005914_130--Hb_003411_120 Hb_000482_080 Hb_000482_080 Hb_005914_130--Hb_000482_080 Hb_001758_090 Hb_001758_090 Hb_005914_130--Hb_001758_090 Hb_000291_240 Hb_000291_240 Hb_005914_130--Hb_000291_240 Hb_007311_050 Hb_007311_050 Hb_005914_130--Hb_007311_050 Hb_010457_040--Hb_001758_090 Hb_002150_100 Hb_002150_100 Hb_010457_040--Hb_002150_100 Hb_025161_060 Hb_025161_060 Hb_010457_040--Hb_025161_060 Hb_025557_080 Hb_025557_080 Hb_010457_040--Hb_025557_080 Hb_000046_390 Hb_000046_390 Hb_010457_040--Hb_000046_390 Hb_001097_080 Hb_001097_080 Hb_003411_120--Hb_001097_080 Hb_000617_300 Hb_000617_300 Hb_003411_120--Hb_000617_300 Hb_147137_010 Hb_147137_010 Hb_003411_120--Hb_147137_010 Hb_003371_030 Hb_003371_030 Hb_003411_120--Hb_003371_030 Hb_001804_020 Hb_001804_020 Hb_003411_120--Hb_001804_020 Hb_000362_030 Hb_000362_030 Hb_000482_080--Hb_000362_030 Hb_000580_210 Hb_000580_210 Hb_000482_080--Hb_000580_210 Hb_004657_070 Hb_004657_070 Hb_000482_080--Hb_004657_070 Hb_004586_440 Hb_004586_440 Hb_000482_080--Hb_004586_440 Hb_005183_130 Hb_005183_130 Hb_000482_080--Hb_005183_130 Hb_000608_090 Hb_000608_090 Hb_000482_080--Hb_000608_090 Hb_001758_090--Hb_004657_070 Hb_001758_090--Hb_000617_300 Hb_000428_040 Hb_000428_040 Hb_001758_090--Hb_000428_040 Hb_003055_100 Hb_003055_100 Hb_001758_090--Hb_003055_100 Hb_007574_040 Hb_007574_040 Hb_001758_090--Hb_007574_040 Hb_000622_190 Hb_000622_190 Hb_001758_090--Hb_000622_190 Hb_000991_060 Hb_000991_060 Hb_000291_240--Hb_000991_060 Hb_000291_240--Hb_025557_080 Hb_001454_350 Hb_001454_350 Hb_000291_240--Hb_001454_350 Hb_000243_240 Hb_000243_240 Hb_000291_240--Hb_000243_240 Hb_145975_010 Hb_145975_010 Hb_000291_240--Hb_145975_010 Hb_001141_430 Hb_001141_430 Hb_000291_240--Hb_001141_430 Hb_007311_050--Hb_000622_190 Hb_000054_010 Hb_000054_010 Hb_007311_050--Hb_000054_010 Hb_007311_050--Hb_000482_080 Hb_102772_010 Hb_102772_010 Hb_007311_050--Hb_102772_010 Hb_003020_200 Hb_003020_200 Hb_007311_050--Hb_003020_200 Hb_000637_100 Hb_000637_100 Hb_007311_050--Hb_000637_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.824548 2.90597 0.402985 47.2175 0.393613 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 2.66165 0.512442 0.710163 7.18881

CAGE analysis