Hb_005914_150

Information

Type -
Description -
Location Contig5914: 90330-92465
Sequence    

Annotation

kegg
ID rcu:RCOM_1217870
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012069900.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
swissprot
ID P0C8Q3
description Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
trembl
ID A0A067KW05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02379 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50249: 91979-92072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_150 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
2 Hb_004452_010 0.1025685825 - - PREDICTED: pentatricopeptide repeat-containing protein At3g58590 [Jatropha curcas]
3 Hb_000427_050 0.103470371 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_001584_150 0.1049023685 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
5 Hb_002636_050 0.1052382505 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
6 Hb_001266_060 0.1064850956 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
7 Hb_000230_080 0.1082569311 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
8 Hb_003467_020 0.1097695314 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]
9 Hb_001956_200 0.1097717096 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
10 Hb_000204_210 0.111172663 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
11 Hb_008500_010 0.1135442896 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
12 Hb_004137_060 0.1145760071 - - PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Jatropha curcas]
13 Hb_000062_250 0.1148138542 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
14 Hb_001437_180 0.1149133367 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
15 Hb_000000_370 0.1168135855 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
16 Hb_002154_030 0.1180341381 - - RNA binding protein, putative [Ricinus communis]
17 Hb_002311_040 0.1192659734 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
18 Hb_007757_110 0.1193505069 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
19 Hb_007163_090 0.1194145785 - - PREDICTED: protein spt2-like [Jatropha curcas]
20 Hb_093084_060 0.1202049909 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]

Gene co-expression network

sample Hb_005914_150 Hb_005914_150 Hb_004452_010 Hb_004452_010 Hb_005914_150--Hb_004452_010 Hb_000427_050 Hb_000427_050 Hb_005914_150--Hb_000427_050 Hb_001584_150 Hb_001584_150 Hb_005914_150--Hb_001584_150 Hb_002636_050 Hb_002636_050 Hb_005914_150--Hb_002636_050 Hb_001266_060 Hb_001266_060 Hb_005914_150--Hb_001266_060 Hb_000230_080 Hb_000230_080 Hb_005914_150--Hb_000230_080 Hb_001956_200 Hb_001956_200 Hb_004452_010--Hb_001956_200 Hb_004452_010--Hb_001266_060 Hb_004452_010--Hb_002636_050 Hb_002678_020 Hb_002678_020 Hb_004452_010--Hb_002678_020 Hb_008500_010 Hb_008500_010 Hb_004452_010--Hb_008500_010 Hb_004452_010--Hb_000427_050 Hb_001159_100 Hb_001159_100 Hb_000427_050--Hb_001159_100 Hb_000427_050--Hb_002678_020 Hb_029584_130 Hb_029584_130 Hb_000427_050--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000427_050--Hb_000007_150 Hb_000427_050--Hb_001266_060 Hb_001584_150--Hb_008500_010 Hb_007757_110 Hb_007757_110 Hb_001584_150--Hb_007757_110 Hb_000204_210 Hb_000204_210 Hb_001584_150--Hb_000204_210 Hb_000062_250 Hb_000062_250 Hb_001584_150--Hb_000062_250 Hb_001507_020 Hb_001507_020 Hb_001584_150--Hb_001507_020 Hb_002311_040 Hb_002311_040 Hb_001584_150--Hb_002311_040 Hb_001437_180 Hb_001437_180 Hb_002636_050--Hb_001437_180 Hb_002636_050--Hb_008500_010 Hb_001700_040 Hb_001700_040 Hb_002636_050--Hb_001700_040 Hb_009486_200 Hb_009486_200 Hb_002636_050--Hb_009486_200 Hb_002636_050--Hb_001584_150 Hb_001226_020 Hb_001226_020 Hb_001266_060--Hb_001226_020 Hb_001266_060--Hb_001956_200 Hb_031042_020 Hb_031042_020 Hb_001266_060--Hb_031042_020 Hb_003687_100 Hb_003687_100 Hb_001266_060--Hb_003687_100 Hb_010710_010 Hb_010710_010 Hb_000230_080--Hb_010710_010 Hb_000413_180 Hb_000413_180 Hb_000230_080--Hb_000413_180 Hb_000207_390 Hb_000207_390 Hb_000230_080--Hb_000207_390 Hb_002307_100 Hb_002307_100 Hb_000230_080--Hb_002307_100 Hb_000390_070 Hb_000390_070 Hb_000230_080--Hb_000390_070 Hb_003750_080 Hb_003750_080 Hb_000230_080--Hb_003750_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64108 3.32645 0.975916 1.49022 2.64217 5.07775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36405 1.8824 5.42631 2.48171 0.839078

CAGE analysis