Hb_005914_160

Information

Type -
Description -
Location Contig5914: 94356-95228
Sequence    

Annotation

kegg
ID rcu:RCOM_1217860
description hypothetical protein
nr
ID XP_012069902.1
description PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
swissprot
ID Q9SL05
description Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1
trembl
ID A0A067KW60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02380 PE=4 SV=1
Gene Ontology
ID GO:0009639
description protein proton gradient regulation chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_160 0.0 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
2 Hb_000708_020 0.0817454521 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_003018_150 0.084830344 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
4 Hb_005694_120 0.0958875336 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
5 Hb_000847_030 0.0971018289 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
6 Hb_001210_060 0.1029461485 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
7 Hb_001047_210 0.1103305389 - - PSI reaction center subunit II [Citrus sinensis]
8 Hb_005843_010 0.1106468992 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
9 Hb_000958_090 0.1115655364 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
10 Hb_002246_030 0.1129745929 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_004128_170 0.114142623 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
12 Hb_000661_270 0.1151367473 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
13 Hb_026549_060 0.1157788051 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_001699_110 0.1199406554 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
15 Hb_001946_120 0.120595193 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
16 Hb_005010_030 0.1211748289 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
17 Hb_001007_070 0.1236487454 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
18 Hb_000083_210 0.1240496731 - - Major facilitator superfamily protein, putative [Theobroma cacao]
19 Hb_003162_060 0.12660677 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
20 Hb_001541_200 0.1267145749 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]

Gene co-expression network

sample Hb_005914_160 Hb_005914_160 Hb_000708_020 Hb_000708_020 Hb_005914_160--Hb_000708_020 Hb_003018_150 Hb_003018_150 Hb_005914_160--Hb_003018_150 Hb_005694_120 Hb_005694_120 Hb_005914_160--Hb_005694_120 Hb_000847_030 Hb_000847_030 Hb_005914_160--Hb_000847_030 Hb_001210_060 Hb_001210_060 Hb_005914_160--Hb_001210_060 Hb_001047_210 Hb_001047_210 Hb_005914_160--Hb_001047_210 Hb_005843_010 Hb_005843_010 Hb_000708_020--Hb_005843_010 Hb_005678_020 Hb_005678_020 Hb_000708_020--Hb_005678_020 Hb_000389_170 Hb_000389_170 Hb_000708_020--Hb_000389_170 Hb_001699_110 Hb_001699_110 Hb_000708_020--Hb_001699_110 Hb_000462_010 Hb_000462_010 Hb_000708_020--Hb_000462_010 Hb_003018_150--Hb_000847_030 Hb_003018_150--Hb_001210_060 Hb_003058_170 Hb_003058_170 Hb_003018_150--Hb_003058_170 Hb_020141_030 Hb_020141_030 Hb_003018_150--Hb_020141_030 Hb_000618_110 Hb_000618_110 Hb_003018_150--Hb_000618_110 Hb_001946_120 Hb_001946_120 Hb_005694_120--Hb_001946_120 Hb_005694_120--Hb_000847_030 Hb_001007_070 Hb_001007_070 Hb_005694_120--Hb_001007_070 Hb_005111_040 Hb_005111_040 Hb_005694_120--Hb_005111_040 Hb_044478_010 Hb_044478_010 Hb_005694_120--Hb_044478_010 Hb_000984_160 Hb_000984_160 Hb_005694_120--Hb_000984_160 Hb_000847_030--Hb_000618_110 Hb_000847_030--Hb_000984_160 Hb_000847_030--Hb_001946_120 Hb_000847_030--Hb_001210_060 Hb_002246_030 Hb_002246_030 Hb_001210_060--Hb_002246_030 Hb_000329_440 Hb_000329_440 Hb_001210_060--Hb_000329_440 Hb_027472_060 Hb_027472_060 Hb_001210_060--Hb_027472_060 Hb_000103_130 Hb_000103_130 Hb_001210_060--Hb_000103_130 Hb_000520_040 Hb_000520_040 Hb_001047_210--Hb_000520_040 Hb_102179_010 Hb_102179_010 Hb_001047_210--Hb_102179_010 Hb_001047_210--Hb_002246_030 Hb_000958_090 Hb_000958_090 Hb_001047_210--Hb_000958_090 Hb_008847_050 Hb_008847_050 Hb_001047_210--Hb_008847_050 Hb_000500_240 Hb_000500_240 Hb_001047_210--Hb_000500_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 15.0303 43.2501 62.3861 0.298221 0.413919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50352 2.95366 0.302947 1.64858 124.98

CAGE analysis