Hb_005914_170

Information

Type -
Description -
Location Contig5914: 95547-100654
Sequence    

Annotation

kegg
ID tcc:TCM_020973
description Eukaryotic initiation factor 4E protein
nr
ID XP_012456528.1
description PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
swissprot
ID P48600
description Eukaryotic translation initiation factor isoform 4E-2 OS=Oryza sativa subsp. japonica GN=Os10g0467600 PE=2 SV=2
trembl
ID A0A0D2UVA9
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G178800 PE=4 SV=1
Gene Ontology
ID GO:0005634
description eukaryotic translation initiation factor isoform 4e-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50251: 95612-100649 , PASA_asmbl_50252: 97190-97621
cDNA
(Sanger)
(ID:Location)		 009_B06.ab1: 99899-100587 , 031_I13.ab1: 96061-100617

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_170 0.0 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
2 Hb_000210_120 0.0545333881 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
3 Hb_011344_120 0.0665605688 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
4 Hb_001314_050 0.0669943221 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
5 Hb_031862_100 0.0679400767 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_003633_050 0.0709705148 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
7 Hb_023001_040 0.0738506769 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
8 Hb_007928_030 0.0738748508 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
9 Hb_000096_160 0.0743004859 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
10 Hb_004586_420 0.0765201724 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
11 Hb_001195_200 0.0767098527 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
12 Hb_000948_160 0.0777082661 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
13 Hb_001016_120 0.0784251248 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
14 Hb_001189_070 0.0800189733 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
15 Hb_011344_190 0.0806224978 - - PREDICTED: maspardin [Jatropha curcas]
16 Hb_089032_030 0.0809636346 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
17 Hb_001545_170 0.0811673637 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
18 Hb_000312_080 0.0812394597 - - PREDICTED: transmembrane protein 97-like [Jatropha curcas]
19 Hb_001489_090 0.0821344779 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
20 Hb_000504_070 0.0825657012 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005914_170 Hb_005914_170 Hb_000210_120 Hb_000210_120 Hb_005914_170--Hb_000210_120 Hb_011344_120 Hb_011344_120 Hb_005914_170--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_003633_050 Hb_003633_050 Hb_005914_170--Hb_003633_050 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040 Hb_000103_270 Hb_000103_270 Hb_000210_120--Hb_000103_270 Hb_003098_020 Hb_003098_020 Hb_000210_120--Hb_003098_020 Hb_007928_030 Hb_007928_030 Hb_000210_120--Hb_007928_030 Hb_000210_120--Hb_011344_120 Hb_000136_350 Hb_000136_350 Hb_000210_120--Hb_000136_350 Hb_011344_120--Hb_007928_030 Hb_001189_070 Hb_001189_070 Hb_011344_120--Hb_001189_070 Hb_009787_030 Hb_009787_030 Hb_011344_120--Hb_009787_030 Hb_004108_220 Hb_004108_220 Hb_011344_120--Hb_004108_220 Hb_000347_240 Hb_000347_240 Hb_011344_120--Hb_000347_240 Hb_000392_430 Hb_000392_430 Hb_001314_050--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_001314_050--Hb_000111_320 Hb_001314_050--Hb_031862_100 Hb_001671_100 Hb_001671_100 Hb_001314_050--Hb_001671_100 Hb_001314_050--Hb_001189_070 Hb_001386_040 Hb_001386_040 Hb_031862_100--Hb_001386_040 Hb_015934_070 Hb_015934_070 Hb_031862_100--Hb_015934_070 Hb_031862_100--Hb_001189_070 Hb_006907_130 Hb_006907_130 Hb_031862_100--Hb_006907_130 Hb_000096_160 Hb_000096_160 Hb_003633_050--Hb_000096_160 Hb_001085_240 Hb_001085_240 Hb_003633_050--Hb_001085_240 Hb_011344_190 Hb_011344_190 Hb_003633_050--Hb_011344_190 Hb_003376_250 Hb_003376_250 Hb_003633_050--Hb_003376_250 Hb_019654_030 Hb_019654_030 Hb_003633_050--Hb_019654_030 Hb_003058_120 Hb_003058_120 Hb_023001_040--Hb_003058_120 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_005588_060 Hb_005588_060 Hb_023001_040--Hb_005588_060 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_023001_040--Hb_001828_180 Hb_000167_010 Hb_000167_010 Hb_023001_040--Hb_000167_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8628 28.5067 28.5607 56.4108 27.1983 36.3844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.7491 77.1229 48.6294 72.601 42.5635

CAGE analysis