Hb_005914_200

Information

Type -
Description -
Location Contig5914: 107113-109174
Sequence    

Annotation

kegg
ID egr:104415942
description 60S ribosomal protein L23-like
nr
ID XP_010556919.1
description PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
swissprot
ID Q07760
description 60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1
trembl
ID K7UJS5
description Uncharacterized protein OS=Zea mays GN=LOC100281952 PE=3 SV=1
Gene Ontology
ID GO:0005739
description 60s ribosomal protein l23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50253: 107014-109198
cDNA
(Sanger)
(ID:Location)		 019_D14.ab1: 107122-109198 , 036_L12.ab1: 107079-109198 , 038_N19.ab1: 107085-107200 , 042_J04.ab1: 107079-109198

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_200 0.0 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
2 Hb_001780_050 0.0530193515 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
3 Hb_000236_150 0.063629773 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
4 Hb_012539_020 0.0652093533 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
5 Hb_004754_070 0.0664953065 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
6 Hb_000163_130 0.0752539978 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
7 Hb_000976_250 0.0767796701 - - -
8 Hb_000389_080 0.0825954652 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
9 Hb_000367_210 0.0839604642 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
10 Hb_012395_130 0.0888043894 - - Os02g0814700 [Oryza sativa Japonica Group]
11 Hb_000300_390 0.0888937272 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
12 Hb_002518_290 0.0890587268 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
13 Hb_008748_020 0.090374951 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
14 Hb_011377_020 0.0944670195 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
15 Hb_103118_020 0.0951405752 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
16 Hb_002316_120 0.0965045863 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
17 Hb_000905_180 0.0995182463 - - 60S ribosomal protein L31A [Hevea brasiliensis]
18 Hb_005474_060 0.0995575495 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
19 Hb_187083_010 0.1025624486 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
20 Hb_002025_300 0.1027738336 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]

Gene co-expression network

sample Hb_005914_200 Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_005914_200--Hb_001780_050 Hb_000236_150 Hb_000236_150 Hb_005914_200--Hb_000236_150 Hb_012539_020 Hb_012539_020 Hb_005914_200--Hb_012539_020 Hb_004754_070 Hb_004754_070 Hb_005914_200--Hb_004754_070 Hb_000163_130 Hb_000163_130 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250 Hb_001780_050--Hb_000163_130 Hb_001780_050--Hb_004754_070 Hb_001780_050--Hb_000236_150 Hb_001780_050--Hb_012539_020 Hb_012395_130 Hb_012395_130 Hb_001780_050--Hb_012395_130 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_000905_180 Hb_000905_180 Hb_000236_150--Hb_000905_180 Hb_000236_150--Hb_000163_130 Hb_000236_150--Hb_012539_020 Hb_000389_080 Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_000300_390 Hb_000300_390 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120 Hb_004754_070--Hb_012395_130 Hb_004754_070--Hb_000163_130 Hb_011377_020 Hb_011377_020 Hb_004754_070--Hb_011377_020 Hb_004007_180 Hb_004007_180 Hb_004754_070--Hb_004007_180 Hb_002835_320 Hb_002835_320 Hb_000163_130--Hb_002835_320 Hb_000163_130--Hb_000905_180 Hb_003053_030 Hb_003053_030 Hb_000163_130--Hb_003053_030 Hb_002518_290 Hb_002518_290 Hb_000976_250--Hb_002518_290 Hb_000976_250--Hb_012539_020 Hb_005474_060 Hb_005474_060 Hb_000976_250--Hb_005474_060 Hb_032969_030 Hb_032969_030 Hb_000976_250--Hb_032969_030 Hb_000976_250--Hb_000300_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.276 17.4734 30.2557 105.284 41.5817 123.564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
268.798 499.814 226.541 117.69 53.0669

CAGE analysis