Hb_005914_210

Information

Type -
Description -
Location Contig5914: 110111-115265
Sequence    

Annotation

kegg
ID rcu:RCOM_1217780
description hypothetical protein
nr
ID XP_012077593.1
description PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50259: 114572-115046 , PASA_asmbl_50260: 113839-115128 , PASA_asmbl_50261: 113839-115128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_210 0.0 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
2 Hb_000762_110 0.0875832219 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
3 Hb_163145_030 0.0905921399 - - PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Jatropha curcas]
4 Hb_001109_160 0.0996379711 - - DNA binding protein, putative [Ricinus communis]
5 Hb_001250_020 0.1085989479 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
6 Hb_021409_190 0.1104284498 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
7 Hb_001009_260 0.1111715057 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
8 Hb_000579_040 0.1143608516 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
9 Hb_130589_010 0.1169216463 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
10 Hb_006916_030 0.1175421599 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
11 Hb_012799_190 0.1214442064 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
12 Hb_008616_040 0.121488964 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
13 Hb_000516_080 0.1216987529 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
14 Hb_000537_070 0.1229753578 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
15 Hb_003582_090 0.1230881557 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
16 Hb_000120_860 0.1241240006 - - nucellin, putative [Ricinus communis]
17 Hb_001348_090 0.1263537278 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
18 Hb_032631_070 0.1291910885 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
19 Hb_004041_030 0.1297230102 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
20 Hb_002374_450 0.1305572498 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_005914_210 Hb_005914_210 Hb_000762_110 Hb_000762_110 Hb_005914_210--Hb_000762_110 Hb_163145_030 Hb_163145_030 Hb_005914_210--Hb_163145_030 Hb_001109_160 Hb_001109_160 Hb_005914_210--Hb_001109_160 Hb_001250_020 Hb_001250_020 Hb_005914_210--Hb_001250_020 Hb_021409_190 Hb_021409_190 Hb_005914_210--Hb_021409_190 Hb_001009_260 Hb_001009_260 Hb_005914_210--Hb_001009_260 Hb_000376_210 Hb_000376_210 Hb_000762_110--Hb_000376_210 Hb_000762_110--Hb_001250_020 Hb_002928_030 Hb_002928_030 Hb_000762_110--Hb_002928_030 Hb_000120_860 Hb_000120_860 Hb_000762_110--Hb_000120_860 Hb_000579_040 Hb_000579_040 Hb_000762_110--Hb_000579_040 Hb_163145_030--Hb_001009_260 Hb_130589_010 Hb_130589_010 Hb_163145_030--Hb_130589_010 Hb_003025_140 Hb_003025_140 Hb_163145_030--Hb_003025_140 Hb_000640_260 Hb_000640_260 Hb_163145_030--Hb_000640_260 Hb_177343_010 Hb_177343_010 Hb_163145_030--Hb_177343_010 Hb_006916_030 Hb_006916_030 Hb_001109_160--Hb_006916_030 Hb_008616_040 Hb_008616_040 Hb_001109_160--Hb_008616_040 Hb_001109_160--Hb_001250_020 Hb_000066_040 Hb_000066_040 Hb_001109_160--Hb_000066_040 Hb_003029_140 Hb_003029_140 Hb_001109_160--Hb_003029_140 Hb_000906_070 Hb_000906_070 Hb_001109_160--Hb_000906_070 Hb_018043_020 Hb_018043_020 Hb_001250_020--Hb_018043_020 Hb_001250_020--Hb_008616_040 Hb_001250_020--Hb_003029_140 Hb_010984_010 Hb_010984_010 Hb_001250_020--Hb_010984_010 Hb_021409_190--Hb_008616_040 Hb_021409_190--Hb_000640_260 Hb_021409_190--Hb_003029_140 Hb_021409_190--Hb_018043_020 Hb_021409_190--Hb_001109_160 Hb_002811_190 Hb_002811_190 Hb_021409_190--Hb_002811_190 Hb_001009_260--Hb_130589_010 Hb_001009_260--Hb_000120_860 Hb_002150_020 Hb_002150_020 Hb_001009_260--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_001009_260--Hb_005571_010 Hb_004735_020 Hb_004735_020 Hb_001009_260--Hb_004735_020 Hb_001009_260--Hb_000579_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.22369 6.83421 13.2898 12.5561 3.33241 3.4723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97086 1.49595 5.31253 4.01628 28.305

CAGE analysis