Hb_005914_230

Information

Type -
Description -
Location Contig5914: 149930-159333
Sequence    

Annotation

kegg
ID pop:POPTR_0008s17140g
description POPTRDRAFT_820827; transducin family protein
nr
ID XP_012077597.1
description PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
swissprot
ID Q94BR4
description Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1
trembl
ID A0A067KEA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12862 PE=4 SV=1
Gene Ontology
ID GO:0004842
description transducin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50264: 157632-159340 , PASA_asmbl_50265: 157632-158979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005914_230 0.0 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
2 Hb_003384_030 0.0537331383 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
3 Hb_018663_020 0.0572970691 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
4 Hb_008725_250 0.0627303782 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_004310_060 0.0650781562 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_000001_180 0.0653226327 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
7 Hb_005147_110 0.0663157322 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
8 Hb_002818_040 0.0704825041 - - tRNA synthetase-related family protein [Populus trichocarpa]
9 Hb_000236_320 0.0704898702 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
10 Hb_000462_150 0.0707684024 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
11 Hb_005701_040 0.0720583673 - - cellular nucleic acid binding protein, putative [Ricinus communis]
12 Hb_005314_010 0.0753247462 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_012305_070 0.0760687749 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001969_040 0.0769717621 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
15 Hb_042083_070 0.0781657519 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
16 Hb_001226_180 0.0807911859 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
17 Hb_002725_070 0.0828871886 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
18 Hb_002044_090 0.0860620851 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
19 Hb_002169_010 0.0876804036 - - PREDICTED: la-related protein 6B [Jatropha curcas]
20 Hb_004678_020 0.0882221001 - - PREDICTED: protein YIF1B [Jatropha curcas]

Gene co-expression network

sample Hb_005914_230 Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_005914_230--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_005914_230--Hb_018663_020 Hb_008725_250 Hb_008725_250 Hb_005914_230--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005914_230--Hb_004310_060 Hb_000001_180 Hb_000001_180 Hb_005914_230--Hb_000001_180 Hb_005147_110 Hb_005147_110 Hb_005914_230--Hb_005147_110 Hb_003384_030--Hb_000001_180 Hb_000462_150 Hb_000462_150 Hb_003384_030--Hb_000462_150 Hb_002818_040 Hb_002818_040 Hb_003384_030--Hb_002818_040 Hb_003384_030--Hb_018663_020 Hb_001969_040 Hb_001969_040 Hb_003384_030--Hb_001969_040 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_008725_250--Hb_005147_110 Hb_008725_250--Hb_004310_060 Hb_002249_140 Hb_002249_140 Hb_008725_250--Hb_002249_140 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070 Hb_004310_060--Hb_005147_110 Hb_000300_280 Hb_000300_280 Hb_004310_060--Hb_000300_280 Hb_000879_140 Hb_000879_140 Hb_004310_060--Hb_000879_140 Hb_004310_060--Hb_018663_020 Hb_000001_180--Hb_002818_040 Hb_004724_360 Hb_004724_360 Hb_000001_180--Hb_004724_360 Hb_005314_010 Hb_005314_010 Hb_000001_180--Hb_005314_010 Hb_004678_020 Hb_004678_020 Hb_000001_180--Hb_004678_020 Hb_001341_030 Hb_001341_030 Hb_005147_110--Hb_001341_030 Hb_005147_110--Hb_018663_020 Hb_000373_270 Hb_000373_270 Hb_005147_110--Hb_000373_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.6664 23.5457 12.7943 7.98691 63.8117 59.4692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.071 19.7183 28.6873 15.1036 4.52744

CAGE analysis