Hb_005918_030

Information

Type -
Description -
Location Contig5918: 71441-78966
Sequence    

Annotation

kegg
ID rcu:RCOM_0311990
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID KDP40770.1
description hypothetical protein JCGZ_24769 [Jatropha curcas]
swissprot
ID Q8RWW0
description Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1
trembl
ID A0A067L8G2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24769 PE=3 SV=1
Gene Ontology
ID GO:0004672
description receptor-like serine threonine-protein kinase ale2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005918_030 0.0 - - hypothetical protein JCGZ_24769 [Jatropha curcas]
2 Hb_002539_080 0.1156902042 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
3 Hb_017124_010 0.126318583 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009265_060 0.1385758617 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
5 Hb_005433_040 0.1400843273 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
6 Hb_002681_110 0.1407100194 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
7 Hb_005463_020 0.1443783271 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
8 Hb_001863_480 0.1468277879 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
9 Hb_012508_040 0.1502118452 - - hypothetical protein POPTR_0006s08460g [Populus trichocarpa]
10 Hb_001141_470 0.1527444881 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
11 Hb_171554_080 0.1537575855 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_007924_020 0.1538950365 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_003787_020 0.1539640971 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
14 Hb_001439_170 0.1545647966 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
15 Hb_000419_040 0.1549059728 - - chorismate synthase [Hevea brasiliensis]
16 Hb_002735_060 0.1550337531 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
17 Hb_176681_010 0.1601821003 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
18 Hb_002119_120 0.1624201119 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
19 Hb_012573_030 0.1629727405 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000753_130 0.1631700317 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]

Gene co-expression network

sample Hb_005918_030 Hb_005918_030 Hb_002539_080 Hb_002539_080 Hb_005918_030--Hb_002539_080 Hb_017124_010 Hb_017124_010 Hb_005918_030--Hb_017124_010 Hb_009265_060 Hb_009265_060 Hb_005918_030--Hb_009265_060 Hb_005433_040 Hb_005433_040 Hb_005918_030--Hb_005433_040 Hb_002681_110 Hb_002681_110 Hb_005918_030--Hb_002681_110 Hb_005463_020 Hb_005463_020 Hb_005918_030--Hb_005463_020 Hb_002282_020 Hb_002282_020 Hb_002539_080--Hb_002282_020 Hb_001711_030 Hb_001711_030 Hb_002539_080--Hb_001711_030 Hb_002527_070 Hb_002527_070 Hb_002539_080--Hb_002527_070 Hb_002735_060 Hb_002735_060 Hb_002539_080--Hb_002735_060 Hb_001863_480 Hb_001863_480 Hb_002539_080--Hb_001863_480 Hb_001439_170 Hb_001439_170 Hb_002539_080--Hb_001439_170 Hb_004800_160 Hb_004800_160 Hb_017124_010--Hb_004800_160 Hb_001141_470 Hb_001141_470 Hb_017124_010--Hb_001141_470 Hb_005357_150 Hb_005357_150 Hb_017124_010--Hb_005357_150 Hb_012508_040 Hb_012508_040 Hb_017124_010--Hb_012508_040 Hb_000861_040 Hb_000861_040 Hb_017124_010--Hb_000861_040 Hb_024714_060 Hb_024714_060 Hb_009265_060--Hb_024714_060 Hb_012573_030 Hb_012573_030 Hb_009265_060--Hb_012573_030 Hb_004048_050 Hb_004048_050 Hb_009265_060--Hb_004048_050 Hb_171554_080 Hb_171554_080 Hb_009265_060--Hb_171554_080 Hb_000419_040 Hb_000419_040 Hb_009265_060--Hb_000419_040 Hb_001006_180 Hb_001006_180 Hb_009265_060--Hb_001006_180 Hb_035273_030 Hb_035273_030 Hb_005433_040--Hb_035273_030 Hb_001105_070 Hb_001105_070 Hb_005433_040--Hb_001105_070 Hb_009773_020 Hb_009773_020 Hb_005433_040--Hb_009773_020 Hb_001135_080 Hb_001135_080 Hb_005433_040--Hb_001135_080 Hb_065525_020 Hb_065525_020 Hb_005433_040--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_005433_040--Hb_002030_040 Hb_000029_030 Hb_000029_030 Hb_002681_110--Hb_000029_030 Hb_157022_020 Hb_157022_020 Hb_002681_110--Hb_157022_020 Hb_000115_060 Hb_000115_060 Hb_002681_110--Hb_000115_060 Hb_071736_020 Hb_071736_020 Hb_002681_110--Hb_071736_020 Hb_000317_030 Hb_000317_030 Hb_002681_110--Hb_000317_030 Hb_007919_050 Hb_007919_050 Hb_002681_110--Hb_007919_050 Hb_002026_190 Hb_002026_190 Hb_005463_020--Hb_002026_190 Hb_000062_340 Hb_000062_340 Hb_005463_020--Hb_000062_340 Hb_005463_020--Hb_002539_080 Hb_054865_130 Hb_054865_130 Hb_005463_020--Hb_054865_130 Hb_010589_040 Hb_010589_040 Hb_005463_020--Hb_010589_040 Hb_000260_060 Hb_000260_060 Hb_005463_020--Hb_000260_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87982 0.188146 0.405182 1.29412 1.41444 0.824704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49182 1.68085 4.34712 0.80448 0.424361

CAGE analysis