Hb_005918_040

Information

Type -
Description -
Location Contig5918: 95400-96167
Sequence    

Annotation

kegg
ID pop:POPTR_0003s04560g
description hypothetical protein
nr
ID XP_006385444.1
description hypothetical protein POPTR_0003s04560g [Populus trichocarpa]
swissprot
ID Q9SJ52
description Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1
trembl
ID A9PI80
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s04560g PE=2 SV=1
Gene Ontology
ID GO:0005886
description protein yls9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 008_L19.ab1: 95357-95992

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005918_040 0.0 - - hypothetical protein POPTR_0003s04560g [Populus trichocarpa]
2 Hb_002498_100 0.1078620431 - - bcr-associated protein, bap, putative [Ricinus communis]
3 Hb_010402_010 0.1138795147 - - BnaC06g23470D [Brassica napus]
4 Hb_010174_130 0.1201401357 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
5 Hb_000029_030 0.1204019306 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
6 Hb_010174_120 0.1252644942 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
7 Hb_002182_040 0.1282401561 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_000258_430 0.1301673161 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
9 Hb_008453_060 0.1309945235 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001439_120 0.1351103722 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000134_110 0.1354139488 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Vitis vinifera]
12 Hb_000538_210 0.1367159413 - - ATP binding protein, putative [Ricinus communis]
13 Hb_010483_020 0.1399940969 - - latex allergen [Hevea brasiliensis]
14 Hb_032215_050 0.1407833306 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
15 Hb_007766_010 0.1421193857 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
16 Hb_000761_020 0.1423105088 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
17 Hb_000481_020 0.1425350609 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
18 Hb_000025_480 0.1434964085 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
19 Hb_002450_050 0.1438492369 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]
20 Hb_000316_050 0.1443808433 - - enoyl-ACP reductase [Vernicia fordii]

Gene co-expression network

sample Hb_005918_040 Hb_005918_040 Hb_002498_100 Hb_002498_100 Hb_005918_040--Hb_002498_100 Hb_010402_010 Hb_010402_010 Hb_005918_040--Hb_010402_010 Hb_010174_130 Hb_010174_130 Hb_005918_040--Hb_010174_130 Hb_000029_030 Hb_000029_030 Hb_005918_040--Hb_000029_030 Hb_010174_120 Hb_010174_120 Hb_005918_040--Hb_010174_120 Hb_002182_040 Hb_002182_040 Hb_005918_040--Hb_002182_040 Hb_002498_100--Hb_000029_030 Hb_002368_050 Hb_002368_050 Hb_002498_100--Hb_002368_050 Hb_006693_030 Hb_006693_030 Hb_002498_100--Hb_006693_030 Hb_000173_170 Hb_000173_170 Hb_002498_100--Hb_000173_170 Hb_002498_100--Hb_010402_010 Hb_007760_030 Hb_007760_030 Hb_002498_100--Hb_007760_030 Hb_000538_210 Hb_000538_210 Hb_010402_010--Hb_000538_210 Hb_004800_160 Hb_004800_160 Hb_010402_010--Hb_004800_160 Hb_010402_010--Hb_010174_120 Hb_010402_010--Hb_000173_170 Hb_000025_480 Hb_000025_480 Hb_010402_010--Hb_000025_480 Hb_001001_160 Hb_001001_160 Hb_010174_130--Hb_001001_160 Hb_002506_010 Hb_002506_010 Hb_010174_130--Hb_002506_010 Hb_000696_110 Hb_000696_110 Hb_010174_130--Hb_000696_110 Hb_003404_030 Hb_003404_030 Hb_010174_130--Hb_003404_030 Hb_010174_130--Hb_000029_030 Hb_000025_200 Hb_000025_200 Hb_010174_130--Hb_000025_200 Hb_000029_030--Hb_002368_050 Hb_000029_030--Hb_006693_030 Hb_001776_110 Hb_001776_110 Hb_000029_030--Hb_001776_110 Hb_000975_290 Hb_000975_290 Hb_000029_030--Hb_000975_290 Hb_001454_210 Hb_001454_210 Hb_000029_030--Hb_001454_210 Hb_011224_080 Hb_011224_080 Hb_000029_030--Hb_011224_080 Hb_000387_080 Hb_000387_080 Hb_010174_120--Hb_000387_080 Hb_010174_120--Hb_000538_210 Hb_001017_090 Hb_001017_090 Hb_010174_120--Hb_001017_090 Hb_001476_100 Hb_001476_100 Hb_010174_120--Hb_001476_100 Hb_010174_120--Hb_010174_130 Hb_007547_010 Hb_007547_010 Hb_002182_040--Hb_007547_010 Hb_003609_040 Hb_003609_040 Hb_002182_040--Hb_003609_040 Hb_000030_010 Hb_000030_010 Hb_002182_040--Hb_000030_010 Hb_000761_020 Hb_000761_020 Hb_002182_040--Hb_000761_020 Hb_014720_160 Hb_014720_160 Hb_002182_040--Hb_014720_160 Hb_005662_030 Hb_005662_030 Hb_002182_040--Hb_005662_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
168.342 5.88573 10.6118 56.2113 114.807 91.3257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.832 76.2642 152.465 18.5121 30.6911

CAGE analysis