Hb_005920_030

Information

Type -
Description -
Location Contig5920: 16780-19927
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID AAV31273.1
description putative polyprotein [Oryza sativa Japonica Group]
swissprot
ID O93209
description Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1
trembl
ID Q60DH2
description Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0002L02.3 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005920_030 0.0 - - putative polyprotein [Oryza sativa Japonica Group]
2 Hb_008055_030 0.0771632433 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_001856_280 0.10376724 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
4 Hb_043792_030 0.1060649514 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
5 Hb_003311_020 0.1167303598 - - conserved hypothetical protein [Ricinus communis]
6 Hb_019654_170 0.1173315875 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
7 Hb_000567_270 0.1256516919 - - hypothetical protein L484_017162 [Morus notabilis]
8 Hb_004520_010 0.1265712425 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_003994_070 0.1279141438 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_000803_230 0.1292421298 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
11 Hb_000346_050 0.1322633294 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
12 Hb_035651_010 0.1326079145 - - receptor-kinase, putative [Ricinus communis]
13 Hb_020831_070 0.1338533819 - - hypothetical protein VITISV_027174 [Vitis vinifera]
14 Hb_008834_010 0.1346750565 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
15 Hb_000644_020 0.1380418666 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_000260_730 0.1412678152 - - -
17 Hb_007885_110 0.1448027846 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
18 Hb_155423_010 0.1452634939 - - -
19 Hb_009851_090 0.1462382138 - - Protein ABIL2, putative [Ricinus communis]
20 Hb_004312_020 0.1470260282 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005920_030 Hb_005920_030 Hb_008055_030 Hb_008055_030 Hb_005920_030--Hb_008055_030 Hb_001856_280 Hb_001856_280 Hb_005920_030--Hb_001856_280 Hb_043792_030 Hb_043792_030 Hb_005920_030--Hb_043792_030 Hb_003311_020 Hb_003311_020 Hb_005920_030--Hb_003311_020 Hb_019654_170 Hb_019654_170 Hb_005920_030--Hb_019654_170 Hb_000567_270 Hb_000567_270 Hb_005920_030--Hb_000567_270 Hb_008055_030--Hb_001856_280 Hb_007885_110 Hb_007885_110 Hb_008055_030--Hb_007885_110 Hb_008055_030--Hb_043792_030 Hb_008055_030--Hb_019654_170 Hb_004520_010 Hb_004520_010 Hb_008055_030--Hb_004520_010 Hb_001856_280--Hb_043792_030 Hb_001856_280--Hb_019654_170 Hb_000346_050 Hb_000346_050 Hb_001856_280--Hb_000346_050 Hb_020831_070 Hb_020831_070 Hb_001856_280--Hb_020831_070 Hb_001880_020 Hb_001880_020 Hb_001856_280--Hb_001880_020 Hb_043792_030--Hb_000346_050 Hb_043792_030--Hb_019654_170 Hb_043792_030--Hb_020831_070 Hb_043792_030--Hb_003311_020 Hb_003994_070 Hb_003994_070 Hb_003311_020--Hb_003994_070 Hb_003311_020--Hb_000567_270 Hb_032016_010 Hb_032016_010 Hb_003311_020--Hb_032016_010 Hb_009851_090 Hb_009851_090 Hb_003311_020--Hb_009851_090 Hb_007533_050 Hb_007533_050 Hb_003311_020--Hb_007533_050 Hb_000432_020 Hb_000432_020 Hb_003311_020--Hb_000432_020 Hb_019654_170--Hb_000346_050 Hb_019654_170--Hb_003311_020 Hb_019654_170--Hb_020831_070 Hb_000567_270--Hb_032016_010 Hb_000567_270--Hb_007533_050 Hb_000644_020 Hb_000644_020 Hb_000567_270--Hb_000644_020 Hb_000567_270--Hb_009851_090 Hb_006455_020 Hb_006455_020 Hb_000567_270--Hb_006455_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0859731 0.0341082 0.0544549 0.00735723 0.0068803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.213572 0.726086

CAGE analysis