Hb_005928_010

Information

Type -
Description -
Location Contig5928: 7123-8968
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04560g
description POPTRDRAFT_754236; hypothetical protein
nr
ID XP_012092108.1
description PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q3EBR6
description Phospholipase A1-Igamma2, chloroplastic OS=Arabidopsis thaliana GN=At2g30550 PE=1 SV=2
trembl
ID A0A067JBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21837 PE=4 SV=1
Gene Ontology
ID GO:0016787
description phospholipase a1- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005928_010 0.0 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
2 Hb_001002_020 0.0245883833 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000277_030 0.033599552 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
4 Hb_136973_020 0.0337256941 - - -
5 Hb_054165_010 0.041172084 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_000248_080 0.0638755222 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_003847_090 0.080479412 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
8 Hb_064885_010 0.082940678 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
9 Hb_006083_010 0.0882786946 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
10 Hb_173029_010 0.093741871 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000628_050 0.0995683192 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_137862_020 0.1060261843 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
13 Hb_009083_020 0.1064876055 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
14 Hb_046610_010 0.1093576413 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_172983_010 0.1098019831 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002849_010 0.1114892791 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
17 Hb_116103_010 0.114174919 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
18 Hb_160950_010 0.1152969361 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
19 Hb_004788_030 0.1191219303 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
20 Hb_000904_110 0.120839578 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_005928_010 Hb_005928_010 Hb_001002_020 Hb_001002_020 Hb_005928_010--Hb_001002_020 Hb_000277_030 Hb_000277_030 Hb_005928_010--Hb_000277_030 Hb_136973_020 Hb_136973_020 Hb_005928_010--Hb_136973_020 Hb_054165_010 Hb_054165_010 Hb_005928_010--Hb_054165_010 Hb_000248_080 Hb_000248_080 Hb_005928_010--Hb_000248_080 Hb_003847_090 Hb_003847_090 Hb_005928_010--Hb_003847_090 Hb_001002_020--Hb_054165_010 Hb_001002_020--Hb_000277_030 Hb_001002_020--Hb_136973_020 Hb_001002_020--Hb_003847_090 Hb_006083_010 Hb_006083_010 Hb_001002_020--Hb_006083_010 Hb_000277_030--Hb_054165_010 Hb_000277_030--Hb_136973_020 Hb_000277_030--Hb_003847_090 Hb_000277_030--Hb_006083_010 Hb_136973_020--Hb_000248_080 Hb_136973_020--Hb_054165_010 Hb_137862_020 Hb_137862_020 Hb_136973_020--Hb_137862_020 Hb_046610_010 Hb_046610_010 Hb_054165_010--Hb_046610_010 Hb_054165_010--Hb_006083_010 Hb_000248_080--Hb_137862_020 Hb_009083_020 Hb_009083_020 Hb_000248_080--Hb_009083_020 Hb_002163_070 Hb_002163_070 Hb_000248_080--Hb_002163_070 Hb_160950_010 Hb_160950_010 Hb_000248_080--Hb_160950_010 Hb_003847_090--Hb_006083_010 Hb_004788_030 Hb_004788_030 Hb_003847_090--Hb_004788_030 Hb_001410_040 Hb_001410_040 Hb_003847_090--Hb_001410_040 Hb_009385_010 Hb_009385_010 Hb_003847_090--Hb_009385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0372246 0.0576177 0.0463265 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis