Hb_005928_050

Information

Type -
Description -
Location Contig5928: 52097-53582
Sequence    

Annotation

kegg
ID sot:102581092
description glutathione reductase, chloroplastic-like
nr
ID AIL54982.1
description glutathione reductase [Hevea brasiliensis]
swissprot
ID P80461
description Glutathione reductase, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GOR PE=1 SV=1
trembl
ID A0A077ETE4
description Glutathione reductase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005739
description glutathione partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50308: 54008-55980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005928_050 0.0 - - glutathione reductase [Hevea brasiliensis]
2 Hb_155541_010 0.1898569954 - - -
3 Hb_006907_100 0.2006809694 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
4 Hb_000122_050 0.2050280491 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000302_130 0.2345309008 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
6 Hb_001269_290 0.2376158903 - - PREDICTED: uncharacterized protein LOC103438859 [Malus domestica]
7 Hb_011485_090 0.2513395387 - - -
8 Hb_000363_330 0.251362412 - - -
9 Hb_000264_290 0.2516049262 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
10 Hb_000743_030 0.2561841416 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
11 Hb_089140_120 0.2566394408 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
12 Hb_149714_010 0.2569343757 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
13 Hb_100105_010 0.2576397088 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
14 Hb_000086_340 0.2584646239 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
15 Hb_000538_240 0.2616221387 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
16 Hb_010907_030 0.2635797812 - - -
17 Hb_008667_040 0.2650271485 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
18 Hb_002232_040 0.2656084756 - - -
19 Hb_014783_010 0.2677940038 - - cold-inducible RNA binding protein, putative [Ricinus communis]
20 Hb_002151_090 0.2692181759 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005928_050 Hb_005928_050 Hb_155541_010 Hb_155541_010 Hb_005928_050--Hb_155541_010 Hb_006907_100 Hb_006907_100 Hb_005928_050--Hb_006907_100 Hb_000122_050 Hb_000122_050 Hb_005928_050--Hb_000122_050 Hb_000302_130 Hb_000302_130 Hb_005928_050--Hb_000302_130 Hb_001269_290 Hb_001269_290 Hb_005928_050--Hb_001269_290 Hb_011485_090 Hb_011485_090 Hb_005928_050--Hb_011485_090 Hb_155541_010--Hb_011485_090 Hb_118228_010 Hb_118228_010 Hb_155541_010--Hb_118228_010 Hb_155541_010--Hb_000302_130 Hb_010913_010 Hb_010913_010 Hb_155541_010--Hb_010913_010 Hb_155541_010--Hb_006907_100 Hb_006907_100--Hb_000302_130 Hb_000743_030 Hb_000743_030 Hb_006907_100--Hb_000743_030 Hb_005000_250 Hb_005000_250 Hb_006907_100--Hb_005000_250 Hb_006907_100--Hb_000122_050 Hb_000086_340 Hb_000086_340 Hb_000122_050--Hb_000086_340 Hb_001911_040 Hb_001911_040 Hb_000122_050--Hb_001911_040 Hb_000302_260 Hb_000302_260 Hb_000122_050--Hb_000302_260 Hb_149714_010 Hb_149714_010 Hb_000122_050--Hb_149714_010 Hb_000122_050--Hb_000302_130 Hb_009545_090 Hb_009545_090 Hb_000122_050--Hb_009545_090 Hb_000264_290 Hb_000264_290 Hb_000302_130--Hb_000264_290 Hb_100105_010 Hb_100105_010 Hb_000302_130--Hb_100105_010 Hb_000302_130--Hb_000743_030 Hb_012120_030 Hb_012120_030 Hb_000302_130--Hb_012120_030 Hb_001269_290--Hb_006907_100 Hb_164255_010 Hb_164255_010 Hb_001269_290--Hb_164255_010 Hb_001269_290--Hb_155541_010 Hb_012379_010 Hb_012379_010 Hb_001269_290--Hb_012379_010 Hb_074836_010 Hb_074836_010 Hb_001269_290--Hb_074836_010 Hb_011485_090--Hb_118228_010 Hb_000926_230 Hb_000926_230 Hb_011485_090--Hb_000926_230 Hb_011485_090--Hb_006907_100 Hb_011485_090--Hb_000302_130 Hb_089140_120 Hb_089140_120 Hb_011485_090--Hb_089140_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169821 0.370069 0.133559 0.401072 0.10649 0.104096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.132472 0.520368 0 0.0432331 0

CAGE analysis