Hb_005928_060

Information

Type -
Description -
Location Contig5928: 54050-57193
Sequence    

Annotation

kegg
ID rcu:RCOM_0992200
description DNA-directed RNA polymerase III 25 kD polypeptide, putative
nr
ID XP_002520987.1
description DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
swissprot
ID Q9Y535
description DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens GN=POLR3H PE=1 SV=1
trembl
ID B9S4T0
description DNA-directed RNA polymerase III 25 kD polypeptide, putative OS=Ricinus communis GN=RCOM_0992200 PE=4 SV=1
Gene Ontology
ID GO:0009507
description dna-directed rna polymerase iii subunit rpc8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50308: 54008-55980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005928_060 0.0 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
2 Hb_000905_190 0.0662710728 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
3 Hb_005527_050 0.0735492664 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
4 Hb_001214_130 0.0737675903 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
5 Hb_000019_230 0.0748195468 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
6 Hb_005237_010 0.0783977692 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
7 Hb_000997_020 0.0800823518 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
8 Hb_000172_370 0.0815031617 - - -
9 Hb_003453_020 0.0831203715 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
10 Hb_003642_060 0.0861204522 - - hypothetical protein RCOM_1189860 [Ricinus communis]
11 Hb_002997_170 0.0885530803 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
12 Hb_003097_150 0.0886492871 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
13 Hb_003126_040 0.0890129946 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001741_140 0.0901355377 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
15 Hb_007547_010 0.0907127166 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
16 Hb_003120_060 0.0910653826 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
17 Hb_002942_020 0.0913083717 - - nucleotide binding protein, putative [Ricinus communis]
18 Hb_010128_130 0.091508029 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
19 Hb_000943_070 0.0923353476 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
20 Hb_005288_160 0.0942346886 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005928_060 Hb_005928_060 Hb_000905_190 Hb_000905_190 Hb_005928_060--Hb_000905_190 Hb_005527_050 Hb_005527_050 Hb_005928_060--Hb_005527_050 Hb_001214_130 Hb_001214_130 Hb_005928_060--Hb_001214_130 Hb_000019_230 Hb_000019_230 Hb_005928_060--Hb_000019_230 Hb_005237_010 Hb_005237_010 Hb_005928_060--Hb_005237_010 Hb_000997_020 Hb_000997_020 Hb_005928_060--Hb_000997_020 Hb_003642_060 Hb_003642_060 Hb_000905_190--Hb_003642_060 Hb_002997_170 Hb_002997_170 Hb_000905_190--Hb_002997_170 Hb_000905_190--Hb_001214_130 Hb_003453_020 Hb_003453_020 Hb_000905_190--Hb_003453_020 Hb_001741_140 Hb_001741_140 Hb_000905_190--Hb_001741_140 Hb_003728_020 Hb_003728_020 Hb_005527_050--Hb_003728_020 Hb_005527_050--Hb_003453_020 Hb_002272_250 Hb_002272_250 Hb_005527_050--Hb_002272_250 Hb_005527_050--Hb_000905_190 Hb_150069_020 Hb_150069_020 Hb_005527_050--Hb_150069_020 Hb_028639_060 Hb_028639_060 Hb_001214_130--Hb_028639_060 Hb_001214_130--Hb_003642_060 Hb_003120_060 Hb_003120_060 Hb_001214_130--Hb_003120_060 Hb_000943_070 Hb_000943_070 Hb_001214_130--Hb_000943_070 Hb_000803_150 Hb_000803_150 Hb_001214_130--Hb_000803_150 Hb_003551_020 Hb_003551_020 Hb_000019_230--Hb_003551_020 Hb_000019_230--Hb_003120_060 Hb_003038_030 Hb_003038_030 Hb_000019_230--Hb_003038_030 Hb_000188_100 Hb_000188_100 Hb_000019_230--Hb_000188_100 Hb_000977_080 Hb_000977_080 Hb_000019_230--Hb_000977_080 Hb_004195_160 Hb_004195_160 Hb_000019_230--Hb_004195_160 Hb_003097_150 Hb_003097_150 Hb_005237_010--Hb_003097_150 Hb_004600_040 Hb_004600_040 Hb_005237_010--Hb_004600_040 Hb_012654_010 Hb_012654_010 Hb_005237_010--Hb_012654_010 Hb_000815_210 Hb_000815_210 Hb_005237_010--Hb_000815_210 Hb_002007_250 Hb_002007_250 Hb_005237_010--Hb_002007_250 Hb_000997_020--Hb_001741_140 Hb_000997_020--Hb_002997_170 Hb_000997_020--Hb_000905_190 Hb_143629_010 Hb_143629_010 Hb_000997_020--Hb_143629_010 Hb_000997_020--Hb_003453_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0355 8.51088 8.63625 6.10781 40.7491 31.6414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.4296 26.4497 18.2738 7.08135 6.69623

CAGE analysis